Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 181 / 4e-56 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 177 / 2e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 167 / 2e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 167 / 3e-50 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 164 / 3e-49 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 163 / 3e-49 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 163 / 3e-49 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47120 159 / 2e-47 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 154 / 6e-46 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 141 / 2e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013595 [exp] 456 / 2e-164 AT2G47140 224 / 3e-73 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034626 [exp] 270 / 7e-91 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021258 [exp] 263 / 6e-88 AT2G47140 177 / 2e-54 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 261 / 1e-87 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022562 [exp] 253 / 3e-84 AT3G29250 223 / 5e-72 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10010544 [exp] 252 / 6e-84 AT3G51680 216 / 2e-69 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004908 [exp] 247 / 5e-82 AT3G51680 209 / 1e-66 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029368 [exp] 241 / 1e-79 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 237 / 7e-78 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206400 [exp] 240 / 4e-79 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 239 / 6e-79 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 237 / 1e-77 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 236 / 1e-77 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 231 / 1e-75 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 230 / 2e-75 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 224 / 5e-73 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 217 / 3e-70 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 212 / 4e-68 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 206 / 6e-66 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10021257 pacid=23178271 polypeptide=Lus10021257 locus=Lus10021257.g ID=Lus10021257.BGIv1.0 annot-version=v1.0 ATGAAAGCTTCCATTATTTCTCAAAGGCTAAAAGGCAAGGTCGCCTTGATTACCGGCGGGGCCAGCGGGATAGGCGCCGCCGCGGCCAGGCTGTTCGCCA ACCACGGCGCAAATGTCATCGTGGCCGACATCCAATCCGACCATGACGACAAAGGCCGCACCAAACAAAAATTCGGGCACCCTTCGATCTCCTACGTCCA CTGCGACGTCAGCAAGGAATCCGACGTCCAAAACGCAGTCGACGCTGCCGTTTCGGCCCACGGGAAGCTGGACGTCATGTTCAGCAATGCAGGAGTGGTG GGGCGGAACAACCTTGCTATGAACATATCCGAGCTGGACAAAAACGACATCGACCGGGTCTTCGGGGTCAACGTCTACGGCGCGTTCTACGCCGCCAAGC ACGCAGCGCGCGTGATGATCCCGGAGAAAAGGGGCAGTATAGTGTTCACCGCCAGCTACGTGACGGAGTCGTTTGGGGACTCCGGACACCCTTATACGGC GTCGAAGCATGCCGTGGTGGGGCTGATGAAGAATCTGAGCGTGGAGTTGGGTGCTCACGGGATACGGGTGAACTCGGTGTCGCCGTTTGGGGTGGCCACG CCGTTAGTCTTGGAAGCTACTGGCGTTACGGATCCGAAGATTATAACGGACGGCGTTACGGCGAGGGTTGGACTGGGAGGGGGGGTCTTGGAAGCTCATG ACGTGGCGGAGGCGGCGCTGTACCTGGCGAGTGAGGAGTCGAAGTTTGTTAGTGGGTTGAATGTTGTTGTTGACGGCGGCTTTAACTTGAAGAGTGCTTA A
AA sequence Show only first row Show all	>Lus10021257 pacid=23178271 polypeptide=Lus10021257 locus=Lus10021257.g ID=Lus10021257.BGIv1.0 annot-version=v1.0 MKASIISQRLKGKVALITGGASGIGAAAARLFANHGANVIVADIQSDHDDKGRTKQKFGHPSISYVHCDVSKESDVQNAVDAAVSAHGKLDVMFSNAGVV GRNNLAMNISELDKNDIDRVFGVNVYGAFYAAKHAARVMIPEKRGSIVFTASYVTESFGDSGHPYTASKHAVVGLMKNLSVELGAHGIRVNSVSPFGVAT PLVLEATGVTDPKIITDGVTARVGLGGGVLEAHDVAEAALYLASEESKFVSGLNVVVDGGFNLKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	0	1
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10010885 [exp]	2.8	0.9798
AT1G47670			Transmembrane amino acid trans...		Lus10003338 [exp]	3.2	0.9853
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10034349 [exp]	3.5	0.9825
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10040936 [exp]	3.9	0.9766
AT5G10530			Concanavalin A-like lectin pro...		Lus10033781 [exp]	4.1	0.9742
AT5G39120			RmlC-like cupins superfamily p...		Lus10006538 [exp]	4.2	0.9829
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10004908 [exp]	4.2	0.9818
					Lus10027376 [exp]	4.5	0.9818
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	5.3	0.9800
AT2G23770			protein kinase family protein ...		Lus10019661 [exp]	6.0	0.9797

Compare expression of checked genes

Lus10021257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.