Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 150 / 4e-44 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 150 / 1e-43 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 143 / 1e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 140 / 4e-40 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47120 140 / 6e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 138 / 5e-39 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 137 / 9e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 137 / 4e-38 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 133 / 1e-37 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 128 / 3e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021257 [exp] 259 / 3e-86 AT2G47140 222 / 3e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013595 [exp] 255 / 6e-85 AT2G47140 224 / 3e-73 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 238 / 4e-78 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013594 [exp] 226 / 4e-75 AT3G51680 114 / 2e-31 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022562 [exp] 228 / 6e-74 AT3G29250 223 / 5e-72 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10034626 [exp] 227 / 1e-73 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010544 [exp] 225 / 5e-73 AT3G51680 216 / 2e-69 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 224 / 1e-72 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016177 [exp] 223 / 3e-72 AT3G26770 219 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206800 [exp] 214 / 2e-68 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 212 / 7e-68 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 210 / 5e-67 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 209 / 8e-67 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 207 / 6e-66 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 204 / 6e-65 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 204 / 7e-65 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 201 / 1e-63 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 194 / 8e-61 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 191 / 7e-60 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10021258 pacid=23178269 polypeptide=Lus10021258 locus=Lus10021258.g ID=Lus10021258.BGIv1.0 annot-version=v1.0 ATGGTTTCTCCGGAAAGCTCTGTCTCTCACAGTCCCTCCTCCTCCGCGCCTTCCCTCACATCCTCTCAATCGTCCCTGGGTCGCCACTCGAGCTCGATCT ATCTTGAAGGATCTGCTCTGCTGCTCAGTCCCATTGCTCAGAGGTTGAAAGACAAGGTCGCCGTGATAACCGGCGGAGCCAGCGGAATCGGAGCCAGCAC CGCCAGGCATTTCGCCAAGCACGGCGCCAAGGTTGTCATCGCCGACATCCAAACCGACCAGGGACACGCCTTGGCCGAACAGATCAACTCCGAATTCGAC GCCCCCGCCACCTACGTCCACTGCGATGTCACCAGCGAGCCGGACGTCGAGAACGCGGTGGCCACGGCGGTGAAGGCCCACGGGAAGCTGGACATCATGT ACAGCAACGCTGGGCTAGGCGGGCAGAACAACATGCTCGCCAAGATAACCGACGTCGACCGTGCCGACCTGGAGCGGGTCTTCGCGGTCAACTTGTACGG CGGGTTCTTCGCCGCCAAGTACGCGGCGAGGGCGATGATCCCGAGGCAGAGCGGGAGCATCCTGTTCACGGCCAGCTCAATCACCGCAACGTACGGGATA TCGGCGCACCCGTACACAGCGGCGAAGAGCGCGGTGGTGGGGTTGATGAAGAATTTGAGCGTGGAGCTTGGACAGTACGGGATAAGGGTCAATGCTGTGT CGCCGTGTGGGGTGGCGACTCCGTTCTCCGTTGAGGCCACCGGGATAACGGATCTGGATCTGATTGAGCATATTGTTTCGGAGAAGGTTGGGCTGAAGGG GGCGGTTTTGAAGGTTGATGACGTGGCGGAGGCGGGGGGATGCGGCGCTGTACCTTGTCAGTGA
AA sequence Show only first row Show all	>Lus10021258 pacid=23178269 polypeptide=Lus10021258 locus=Lus10021258.g ID=Lus10021258.BGIv1.0 annot-version=v1.0 MVSPESSVSHSPSSSAPSLTSSQSSLGRHSSSIYLEGSALLLSPIAQRLKDKVAVITGGASGIGASTARHFAKHGAKVVIADIQTDQGHALAEQINSEFD APATYVHCDVTSEPDVENAVATAVKAHGKLDIMYSNAGLGGQNNMLAKITDVDRADLERVFAVNLYGGFFAAKYAARAMIPRQSGSILFTASSITATYGI SAHPYTAAKSAVVGLMKNLSVELGQYGIRVNAVSPCGVATPFSVEATGITDLDLIEHIVSEKVGLKGAVLKVDDVAEAGGCGAVPCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021258 [exp]	0	1
AT1G47530			MATE efflux family protein (.1...		Lus10042344 [exp]	1.0	0.9899
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013593 [exp]	2.4	0.9876
AT1G06000			UDP-Glycosyltransferase superf...		Lus10007971 [exp]	4.5	0.9833
					Lus10040445 [exp]	5.7	0.9868
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10007972 [exp]	7.7	0.9812
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10009988 [exp]	11.0	0.9793
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	11.7	0.9672
AT3G24170		ATGR1	glutathione-disulfide reductas...		Lus10000758 [exp]	11.9	0.9668
AT4G23690			Disease resistance-responsive ...		Lus10032331 [exp]	12.0	0.9770
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	13.6	0.9810

Compare expression of checked genes

Lus10021258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.