Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 147 / 1e-43 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 127 / 1e-35 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 125 / 4e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 95 / 1e-23 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G03140 96 / 3e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 89 / 3e-21 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 89 / 3e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 87 / 2e-20 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 86 / 2e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47150 84 / 5e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021314 [exp] 312 / 4e-108 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 309 / 4e-107 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 303 / 1e-104 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 289 / 3e-99 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 280 / 1e-95 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032192 [exp] 172 / 2e-54 AT3G26770 149 / 2e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 172 / 4e-53 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 166 / 5e-51 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10017012 [exp] 155 / 1e-46 AT3G26770 139 / 2e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G106100 [exp] 171 / 8e-53 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 170 / 2e-52 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 169 / 3e-52 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 167 / 3e-51 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 135 / 6e-39 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 133 / 6e-38 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 130 / 6e-37 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 126 / 2e-35 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 126 / 3e-35 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 125 / 5e-35 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10021311 pacid=23178195 polypeptide=Lus10021311 locus=Lus10021311.g ID=Lus10021311.BGIv1.0 annot-version=v1.0 ATGGCATCCAGCGCCACATTTGTTTCTTCGTCCAATGGTATTACTGCTCGGAGGCTAGAAGGCAAAGTGGCTCTCGTAACCGGGGGAGCAAGCGGCATAG GCGAGAGCACTGTCAGGCTATTCGTCCAACACGGCGCCAAAGTTTTGATTGCCGACGTTCAGGATAAGCTCGGCGAGTCGCTCGCCCAAGAACTTGGCCT GCCAGAGACCGTCTCGTTCGTCCACTGCAACGTGACGAGCGATTCGGACATGAAAAATGCAGTGGACACCGCGTTGTCGAGATACGGCCAGCTTGGTCTT GTTTCCACCGTGACGCCGAGCTCCTGCAAATGGAGACAACATCCGTTAGTAATGAATGCATTAGTAAGACGATACAACAGCAACACCCATGGAATTAGGG GCAACACAATTTCGCCGTACGGAGTAGCGACACCCATGGTGACGTGCGGAATGCAGATGGATAAGAAGGCTGCAGAAGAATTTATGTCGGCGGCGGGAAA TTTAAAAGGTGCTGTGTTAGAACCCGAGGATGTTGCTAAGGCGGCTCTGTATTTGGCTAGTGACGATGCTAAATACGTCAGTGGATTGAATTTGATTGTG GATGGCGGTCACAACCATAATCATCCACTTTTTGGTGCATCCGCTTGA
AA sequence Show only first row Show all	>Lus10021311 pacid=23178195 polypeptide=Lus10021311 locus=Lus10021311.g ID=Lus10021311.BGIv1.0 annot-version=v1.0 MASSATFVSSSNGITARRLEGKVALVTGGASGIGESTVRLFVQHGAKVLIADVQDKLGESLAQELGLPETVSFVHCNVTSDSDMKNAVDTALSRYGQLGL VSTVTPSSCKWRQHPLVMNALVRRYNSNTHGIRGNTISPYGVATPMVTCGMQMDKKAAEEFMSAAGNLKGAVLEPEDVAKAALYLASDDAKYVSGLNLIV DGGHNHNHPLFGASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021311 [exp]	0	1
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10010545 [exp]	1.4	0.9908
AT1G47670			Transmembrane amino acid trans...		Lus10003338 [exp]	2.4	0.9897
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013595 [exp]	4.6	0.9897
					Lus10010257 [exp]	7.7	0.9882
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	9.4	0.9865
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	9.7	0.9882
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10025045 [exp]	10.0	0.9729
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10023069 [exp]	10.2	0.9825
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10032192 [exp]	12.2	0.9878
					Lus10041161 [exp]	13.9	0.9707

Compare expression of checked genes

Lus10021311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.