Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 237 / 1e-77 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 233 / 1e-76 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 229 / 2e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 228 / 2e-74 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 228 / 3e-74 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G03140 226 / 8e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 214 / 6e-69 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 211 / 6e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 211 / 1e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 211 / 2e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021313 [exp] 531 / 0 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 513 / 0 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 507 / 0 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 506 / 0 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 498 / 0 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 498 / 0 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032192 [exp] 355 / 6e-126 AT3G26770 149 / 2e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 358 / 2e-125 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 341 / 1e-118 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073900 [exp] 376 / 1e-132 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 367 / 5e-129 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 336 / 8e-117 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 335 / 2e-116 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 330 / 1e-114 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 310 / 1e-106 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 304 / 4e-104 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 304 / 4e-104 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 295 / 1e-100 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 295 / 2e-100 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10021312 pacid=23178242 polypeptide=Lus10021312 locus=Lus10021312.g ID=Lus10021312.BGIv1.0 annot-version=v1.0 ATGGGATCCACATCATCACCCGATGTTATCGGTGCTCGAAGGCTGCAAGGCAAAGTGGCTCTGGTAACCGGGGGAGCAAGCGGCATAGGAGAGAGCACAG TCAGGCTCTTCGTCCAACACGGCGCCAAAGTCCTGATCGCAGACGTCCAAGACAAACTTGGCCAATCGCTCGCCGAAGAACTTGGCCTGCCGGAGACGGT CTCCTTCGTCCACTGCAACATAACCAGCGATTCCGACATGAAAAATGCAGTTGACACGGCCGTGTCGAGGTACGGCCAGCTGGATATCATGTACAATAAC GCTGGAATCGGAGGCAACTTGGACACCACGATTCTAAACTCGGACAACGCTGACTTCAAGAAGGTGTTGGAAATCAACCTGTTCGGATCCTTCTTAGGAG CGAAACACGCAGCTAGGGTGATGATCCCGGCTAGGAAAGGTTGCATTTTGTTCACGGGAAGTGTAGCAGCTTCGATAAGCGGGGACTTGTCTTATGCATA CAAGGCTTCGAAGCATGCGATTTTGGGGCTCAATAATAATTTGACTGTGGAATTAGGCAAGTATGGGATTAGAGTTAACACAATTTCTCCGTATGGTGTG GCTACTCCCATGGTGACAAGTGGAATGCAGATGGAAAAGAAGGGTGCGGAAGAATTCATGTCGGCGGCGGGAAACTTGAGAGGTGCGGTGTTGGAGCCTG AGGATGTTGCTAAGGCGGCGCTGTATCTAGCAAGTGATGATGCAAAGTACGTAAGCGGGCTTAATTTGATTGTGGACGGTGGTCACAATCACAACCATCC GTTGTTTGGTGCATCGGCTTAA
AA sequence Show only first row Show all	>Lus10021312 pacid=23178242 polypeptide=Lus10021312 locus=Lus10021312.g ID=Lus10021312.BGIv1.0 annot-version=v1.0 MGSTSSPDVIGARRLQGKVALVTGGASGIGESTVRLFVQHGAKVLIADVQDKLGQSLAEELGLPETVSFVHCNITSDSDMKNAVDTAVSRYGQLDIMYNN AGIGGNLDTTILNSDNADFKKVLEINLFGSFLGAKHAARVMIPARKGCILFTGSVAASISGDLSYAYKASKHAILGLNNNLTVELGKYGIRVNTISPYGV ATPMVTSGMQMEKKGAEEFMSAAGNLRGAVLEPEDVAKAALYLASDDAKYVSGLNLIVDGGHNHNHPLFGASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021312 [exp]	0	1
AT5G67550			unknown protein		Lus10025583 [exp]	2.0	0.9892
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016991 [exp]	3.7	0.9870
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028378 [exp]	4.9	0.9811
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10032654 [exp]	5.3	0.9632
AT1G20870			HSP20-like chaperones superfam...		Lus10018368 [exp]	5.8	0.9709
AT5G39160			RmlC-like cupins superfamily p...		Lus10021980 [exp]	5.9	0.9809
					Lus10041164 [exp]	6.9	0.9803
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034838 [exp]	7.7	0.9818
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10036396 [exp]	7.7	0.9866
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034817 [exp]	7.7	0.9822

Compare expression of checked genes

Lus10021312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.