Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52340 220 / 7e-71 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 207 / 1e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 207 / 2e-65 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 194 / 4e-61 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 194 / 4e-61 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 194 / 6e-61 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 196 / 1e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 194 / 2e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 190 / 2e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 183 / 3e-56 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016996 [exp] 477 / 3e-172 AT3G51680 211 / 3e-67 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 279 / 6e-94 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 277 / 2e-93 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029369 [exp] 271 / 4e-91 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014226 [exp] 267 / 2e-89 AT3G51680 230 / 1e-74 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 264 / 4e-88 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 261 / 4e-87 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 261 / 4e-87 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 260 / 1e-86 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206800 [exp] 366 / 2e-128 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 299 / 6e-102 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 297 / 2e-101 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 292 / 3e-99 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 292 / 3e-99 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 288 / 1e-97 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 283 / 1e-95 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 256 / 6e-85 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 254 / 2e-84 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 252 / 1e-83 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10021319 pacid=23178274 polypeptide=Lus10021319 locus=Lus10021319.g ID=Lus10021319.BGIv1.0 annot-version=v1.0 ATGAACTCCCAGTACTCTTCTTCTCCAATCCTCCCGCCCGTTGCCCAAAGGCTAGCAGGCAAAGTGGCCATAATCACCGGAGGCGCCAGCGGCATCGGCG AGTCCACCGCTAGGCTCTTCGTCAAGCACGGCGCAAGAGTCGTAATCGCCGACCTCCAAGACCAACTAGGCCATTCTCTCTGCCGCCAACTCAACAACAA CATCACCAAGAACGACGTCGCTTCCTACGTCCACTGTGACGTCACCATGGACTCCCACGTCCGAAACGCGGTTGACTTTGCCGTTTCGACGTACGGGAAG TTAGACATCATGTACAACAACGCCGGCATCACAGGCCACGTGGTACCAGCCGATGCAGTCAACGACGGGGACGACGACTTCAGGCGCGTGATGGACGTGA ACGTGTACGGTGGGTACTTGGGAGCAAAGCACGCGGCGCCTGTGATGGTGGCTAGCAGAAAGGGAGGGGTGATACTCTTCACAGGGAGCGTGGCTTCGGC TACGTGCGGGGAGTCGCCGCACGCGTACACGGCGTCGAAGCACGCGGTGGTGGGGCTGATGAGGAACCTGTGTGTTGAGCTGGGGAAGCACGGGGTGAGG GTGAACTGTATCTCGCCGTGTGCGATGGCGACGCCGTTGCTGAGGGAGGCGATGGGTGGGGTTGCGAAGGAGGTTGTGGAAGGGGTGATATGCGAGTCGG CGGTGTTGAAAGGTGTGGTTCCCGACCCGAGTGACGTGGCGGCGGCGGCTGTTTACCTGGGGAGTGACGAGGCGAGGTTCGTGAGTGGGGGTAATTTGAT GGGGGATGGCGGCTACACTACCACTAACCAGTCTTTTAATCTCGCCCTTCAGAATTTGTTTCCCTCCTAA
AA sequence Show only first row Show all	>Lus10021319 pacid=23178274 polypeptide=Lus10021319 locus=Lus10021319.g ID=Lus10021319.BGIv1.0 annot-version=v1.0 MNSQYSSSPILPPVAQRLAGKVAIITGGASGIGESTARLFVKHGARVVIADLQDQLGHSLCRQLNNNITKNDVASYVHCDVTMDSHVRNAVDFAVSTYGK LDIMYNNAGITGHVVPADAVNDGDDDFRRVMDVNVYGGYLGAKHAAPVMVASRKGGVILFTGSVASATCGESPHAYTASKHAVVGLMRNLCVELGKHGVR VNCISPCAMATPLLREAMGGVAKEVVEGVICESAVLKGVVPDPSDVAAAAVYLGSDEARFVSGGNLMGDGGYTTTNQSFNLALQNLFPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021319 [exp]	0	1
AT3G49950	GRAS		GRAS family transcription fact...		Lus10018498 [exp]	2.8	0.9498
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10039214 [exp]	3.7	0.9333
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10003624 [exp]	4.5	0.8504
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	6.5	0.8663
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10036496 [exp]	7.9	0.9261
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10006733 [exp]	10.5	0.9129
AT3G05470			Actin-binding FH2 (formin homo...		Lus10004505 [exp]	11.1	0.9181
AT1G68780			RNI-like superfamily protein (...		Lus10038948 [exp]	11.2	0.8467
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10030105 [exp]	15.4	0.8795
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018520 [exp]	16.6	0.9014

Compare expression of checked genes

Lus10021319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.