Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52340 238 / 7e-78 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 222 / 5e-72 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 222 / 4e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 220 / 8e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 217 / 1e-69 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 215 / 2e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 213 / 5e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 211 / 6e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 210 / 2e-67 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47130 207 / 2e-66 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016997 [exp] 519 / 0 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 268 / 8e-90 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 266 / 5e-89 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 266 / 6e-89 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 266 / 7e-89 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 265 / 1e-88 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029369 [exp] 265 / 2e-88 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 263 / 7e-88 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 263 / 8e-88 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074000 [exp] 411 / 3e-146 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 407 / 1e-144 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 300 / 2e-102 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 290 / 9e-99 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 287 / 2e-97 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 285 / 2e-96 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 283 / 6e-96 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 281 / 3e-95 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 280 / 1e-94 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 274 / 3e-92 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10021320 pacid=23178265 polypeptide=Lus10021320 locus=Lus10021320.g ID=Lus10021320.BGIv1.0 annot-version=v1.0 ATGGCGGCAACACCCTTCATCTCTTCCATAGCAAAGCGGCTAGAAGGCAAAGTAGCGCTAATCACAGGCGGTGCTAGCGGGATCGGGGAATTCACGGCGA GGGTGTTCGCCCACCACGGCGCCAAAGTCGTCATCGCCGATGTCCAAGACGACCTCGGCCAATCGGTCGTAGCCGACAACTTAGGCAGGTCCAATTCCAC CTACGTCCACTGCGACGTCACTGACGAATCCCAGGTCAAATCCGCCGTCGACACCGCAGTATCCACCTACGGGAAGCTGGACATCATGTTCAACAACGCC GGGATCGCCGACCCGAACAAGCCCCGGATCGTCGATGTCGAGAAATCCGACTTCGACCGGGTCCTGAGCATCAACGTCACGGGAGTTTTCCTCGGGACGA AGCACGCAGCCAGAGTCATGATCCCTCGGCGAACCGGCTGCATCATCTCCACGGCGAGCATCAGCTCGGCGATCGGCGGCGCGGCTTCCCACGCCTACTG CTGCGCGAAGCACGCGGTGCTCGGGTTGACCCGGAACGCTGCGGTAGAGCTGGGACAGTTCGGGATTCGGGTCAACTGTCTGGCGCCTTACGCGATGGCG ACCCCGCTCGCGACCAAGTTCGTGGGGCTGCCTGACGAGCAGCTCGAGGCGGCGATGAACTCGCTGGCGACTTTGAAAGGGGTGACGCTTAAAACGGAGG ACGTGGCGAATGCGGCTCTGTTTCTGGCCAGCGAGGAGGCTAGATATGTGAGCGGGCATAATTTGTTTGTGGATGGTGCGTTTAGTGTTCATAATTCAGC GTTTCAGGTGTTCACGTACCCCGAAGAAGAGAAATGA
AA sequence Show only first row Show all	>Lus10021320 pacid=23178265 polypeptide=Lus10021320 locus=Lus10021320.g ID=Lus10021320.BGIv1.0 annot-version=v1.0 MAATPFISSIAKRLEGKVALITGGASGIGEFTARVFAHHGAKVVIADVQDDLGQSVVADNLGRSNSTYVHCDVTDESQVKSAVDTAVSTYGKLDIMFNNA GIADPNKPRIVDVEKSDFDRVLSINVTGVFLGTKHAARVMIPRRTGCIISTASISSAIGGAASHAYCCAKHAVLGLTRNAAVELGQFGIRVNCLAPYAMA TPLATKFVGLPDEQLEAAMNSLATLKGVTLKTEDVANAALFLASEEARYVSGHNLFVDGAFSVHNSAFQVFTYPEEEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021320 [exp]	0	1
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10041863 [exp]	2.4	0.9236
AT2G21100			Disease resistance-responsive ...		Lus10025065 [exp]	4.7	0.9222
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10033327 [exp]	6.0	0.9169
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	8.7	0.9161
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10034786 [exp]	9.9	0.9096
AT2G39710			Eukaryotic aspartyl protease f...		Lus10040279 [exp]	10.7	0.8995
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	13.4	0.9136
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	13.9	0.9128
AT5G43060			Granulin repeat cysteine prote...		Lus10027877 [exp]	14.0	0.9031
					Lus10002087 [exp]	14.1	0.9109

Compare expression of checked genes

Lus10021320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.