Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57620 238 / 9e-77 MYB ATMYB36 myb domain protein 36 (.1) AT2G36890 233 / 4e-75 MYB BIT1, ATMYB38, RAX2 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) AT5G65790 232 / 6e-74 MYB AtMYB68 myb domain protein 68 (.1) AT3G49690 229 / 1e-73 MYB ATMYB84, RAX3 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) AT5G23000 224 / 3e-71 MYB ATMYB37, RAX1 REGULATOR OF AXILLARY MERISTEMS 1, myb domain protein 37 (.1) AT4G37780 218 / 4e-69 MYB ATMYB87 myb domain protein 87 (.1) AT5G56110 179 / 4e-54 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT4G09460 171 / 6e-52 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT5G15310 172 / 5e-51 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G61250 171 / 5e-51 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016139 [exp] 495 / 8e-178 AT5G57620 236 / 6e-76 myb domain protein 36 (.1) Lus10026543 [exp] 249 / 6e-81 AT2G36890 234 / 6e-75 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) Lus10013830 [exp] 249 / 1e-80 AT5G57620 236 / 1e-75 myb domain protein 36 (.1) Lus10001394 [exp] 232 / 8e-75 AT5G57620 236 / 2e-76 myb domain protein 36 (.1) Lus10011606 [exp] 234 / 1e-74 AT5G57620 245 / 3e-79 myb domain protein 36 (.1) Lus10039646 [exp] 233 / 1e-74 AT5G57620 244 / 6e-79 myb domain protein 36 (.1) Lus10023002 [exp] 231 / 2e-74 AT2G36890 236 / 4e-77 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) Lus10007248 [exp] 232 / 1e-73 AT5G57620 259 / 3e-84 myb domain protein 36 (.1) Lus10028248 [exp] 231 / 2e-73 AT5G65790 253 / 2e-82 myb domain protein 68 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G007100 [exp] 292 / 7e-98 AT5G57620 239 / 5e-77 myb domain protein 36 (.1) Potri.004G215100 [exp] 280 / 3e-93 AT5G57620 240 / 2e-77 myb domain protein 36 (.1) Potri.006G123400 [exp] 246 / 6e-80 AT5G57620 233 / 9e-75 myb domain protein 36 (.1) Potri.016G099200 [exp] 244 / 5e-79 AT5G57620 234 / 3e-75 myb domain protein 36 (.1) Potri.018G095900 [exp] 234 / 1e-74 AT5G57620 275 / 2e-90 myb domain protein 36 (.1) Potri.002G113700 [exp] 229 / 3e-73 AT3G49690 239 / 5e-77 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.006G170800 [exp] 229 / 5e-73 AT5G57620 268 / 5e-88 myb domain protein 36 (.1) Potri.007G007900 [exp] 228 / 1e-72 AT3G49690 253 / 1e-82 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.006G234200 [exp] 223 / 3e-71 AT3G49690 232 / 7e-75 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.018G058800 [exp] 215 / 9e-69 AT3G49690 224 / 1e-72 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10021428 pacid=23179225 polypeptide=Lus10021428 locus=Lus10021428.g ID=Lus10021428.BGIv1.0 annot-version=v1.0 ATGGGGAGAGCTCCATGTTGTGACAAGGCAAATGTGAAGAAAGGGCCATGGTCCCCTGAAGAAGATGCCAAGCTCAAAGACTACATTGACAAGTTTGGCA CTGGTGGCAATTGGATTGCTCTCCCTCACAAAGCTGGGTTGAAGAGATGTGGGAAGAGTTGCAGGCTGAGGTGGCTGAACTACTTGAGACCAAACATCAA GCATGGGGAATTCTCTGATGATGAAGATAGGATCATATGCAGCCTCTTTGCCACCATTGGTAGCAGATGGTCAATAATAGCAGCACAGTTGCCAGGGAGG ACAGACAATGACATCAAGAACTATTGGAACACCAAGCTCAAGAAGAAGCTCATGTCTATGTCTCCACACAACTTCCCTAACAAACACCATCATCCTCTTC AAAGATCAAAGCCCTTTCATCAGTTCCATCCTTCTTCTTCTCTTGTCCCACAAACAAACTTCAACTTCCTCTCTTCTTTCATCACTTCTCCTCCTCCAAT CACCACCACCAATGGGTTTGATCCAATGGCTAACAACAGCTTCCCATCAAATCCCAATACCCTTTTGCAAACCCTCCAAGATGGTACTAGTACTCTCTTG AGTACCATGCAACTCTACAATGGTACTCCAAGTAACAATCTATTGGTGTTTGGAAGTGGTGGTAAGGATCATCAAGTGGCAAGTTGTAGCTCAAACTCAG ATGGGAGTAGAGGAGGCAAGGATGTTGGTCAGCAACAAGTCAAACAAGAGGAAGTCAACATTTATAGTCAAAGCTATGGTGGGTATGGTGATCATAATCA TCAGAAGTTTATGCTTAGTTATGGAAATGGGTTTGATGAGTTTGGTGGTGGTGTTCATCTTGAGGAGGAAGTGAAGAAGATGATCATAAATAATGATGAT GATCATAATGACAATAGTAACCTTATGGTTAATGTTCTTGATCAAGAGAAGGCTATGTACTATTACTACTAG
AA sequence Show only first row Show all	>Lus10021428 pacid=23179225 polypeptide=Lus10021428 locus=Lus10021428.g ID=Lus10021428.BGIv1.0 annot-version=v1.0 MGRAPCCDKANVKKGPWSPEEDAKLKDYIDKFGTGGNWIALPHKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDDEDRIICSLFATIGSRWSIIAAQLPGR TDNDIKNYWNTKLKKKLMSMSPHNFPNKHHHPLQRSKPFHQFHPSSSLVPQTNFNFLSSFITSPPPITTTNGFDPMANNSFPSNPNTLLQTLQDGTSTLL STMQLYNGTPSNNLLVFGSGGKDHQVASCSSNSDGSRGGKDVGQQQVKQEEVNIYSQSYGGYGDHNHQKFMLSYGNGFDEFGGGVHLEEEVKKMIINNDD DHNDNSNLMVNVLDQEKAMYYYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	0	1
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	2.6	0.9473
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	2.8	0.9471
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036353 [exp]	3.5	0.9297
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	3.6	0.9120
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	4.9	0.9422
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	6.9	0.9402
AT4G05160			AMP-dependent synthetase and l...		Lus10026544 [exp]	7.3	0.8805
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10034786 [exp]	7.5	0.9222
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10033327 [exp]	7.9	0.9235
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	8.7	0.9299

Compare expression of checked genes

Lus10021428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.