Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53230 1447 / 0 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 1436 / 0 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 1433 / 0 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 421 / 5e-135 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT2G03670 404 / 3e-131 CDC48B cell division cycle 48B (.1) AT3G56690 256 / 2e-72 CIP111 Cam interacting protein 111 (.1) AT1G03000 255 / 2e-72 PEX6 peroxin 6 (.1) AT5G08470 235 / 1e-64 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT1G05910 234 / 2e-64 cell division cycle protein 48-related / CDC48-related (.1) AT5G19990 209 / 4e-60 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016124 [exp] 1532 / 0 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 1519 / 0 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 1518 / 0 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 1417 / 0 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 1343 / 0 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 773 / 0 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020255 [exp] 434 / 5e-137 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1) Lus10002639 [exp] 434 / 7e-135 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10039722 [exp] 418 / 6e-134 AT3G01610 754 / 0.0 embryo defective 1354, cell division cycle 48C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G091600 [exp] 1464 / 0 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 1456 / 0 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 1425 / 0 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 1410 / 0 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 1279 / 0 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 424 / 4e-136 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G128700 [exp] 409 / 5e-133 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.014G133000 [exp] 254 / 7e-72 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.001G174100 [exp] 251 / 3e-70 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.006G035000 [exp] 246 / 1e-68 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0332 [flax] [poplar] AcetylDC-like PF02359 [flax] [poplar] CDC48_N Cell division protein 48 (CDC48), N-terminal domain CL0402 [flax] [poplar] Cdc48_2-like PF02933 [flax] [poplar] CDC48_2 Cell division protein 48 (CDC48), domain 2 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10021441 pacid=23179143 polypeptide=Lus10021441 locus=Lus10021441.g ID=Lus10021441.BGIv1.0 annot-version=v1.0 ATGGCGGACAAAGCTGAATCGTCAGATTCGAAATCGGGGAAGAGGGACTTCTCCACCGCGATTCTGGAGAGGAAGAAGTCTCCGAATCGGCTGGTAGTTG ACGAGGCGGTCAACGATGATAATTCCGTCGTCGCGATGCACCCTGACACCATGGAGAAGCTCCAGCTCTTCCGCGGCGATACGATTCTTATCAAGGGCAA GAAAAGGAAGGATACTATCTGCATTGCTCTGGCCGATGAGACATGCGATCAGCCTAAGATTAGGATGAACAAGGTTGTAAGGTCAAACTTGAGGGTGCGG CTTGGTGATGTTGTTTCGGTGCACCAGTGTCCGGATGTTAAGTATGGGAAGCGTGTCCACATACTGCCAATCGATGACACGATCGAAGGGGTTACTGGAA ACCTCTTTGATGCCTATTTGAAGCCTTATTTCCTAGAGGCTTATCGCCCAGTGAGGAAAGGAGATTTCTTCCTTGTCAGAGGTGGCATGCGAAGCGTAGA GTTCAAGGTGATTGAAACTGACCCAGGTGATTACTGTGTTGTTGCCCCAGATACTGAAATTTTCTGTGAGGGAGAACCAGTTAGACGGGAGGATGAAGAT AGGTTGGATGAGGTTGGTTATGATGATGTTGGTGGAGTTAGAAAGCAGATGGCTCAGATTCGTGAGTTGGTTGAGCTTCCATTAAGGCATCCACAGCTTT TCAAATCAATTGGTGTGAAGCCGCCCAAAGGTATTCTGCTCTACGGGCCTCCCGGTTCTGGAAAGACCTTGATAGCCAGGGCCGTGGCTAACGAAACTGG TGCATTCTTCTTCTGCATCAATGGACCTGAAATAATGTCCAAATTGGCTGGAGAGAGTGAGAGCAATCTCAGGAAGGCTTTTGAGGAGGCTGAGAAGAAT GCTCCTTCCATCATCTTCATTGATGAGATAGATTCAATTGCCCCTAAGCGTGAAAAGACAAATGGTGAAGTTGAAAGGCGCATTGTCTCGCAACTCCTGA CTCTCATGGATGGACTTAAATCTCGTGCCCATGTGATTGTTATGGGCGCTACAAACCGTCCTAACAGCATCGACCCAGCTCTCAGAAGGTTTGGAAGGTT CGATAGGGAGATTGATATTGGTGTTCCTGATGAAGTTGGGCGTCTTGAGGTTCTTCGTATCCATACCAAGAATATGAAACTCTCTGATGAAGTTGACCTG GAAAGGATCTCAAAAGATACCCATGGATATGTTGGTGCTGATCTTGCTGCTCTATGCACTGAAGCTGCACTCCAGTGCATCAGAGAGAAGATGGATGTTA TAGATCTTGAAGATGATACAATTGATGCTGAGATATTAAACTCAATGGCTGTTACAAATGAACACTTCCAAACCGCTCTTGGAACTAGCAACCCATCTGC TCTGCGTGAAACTGTTGTTGAAGTACCAAACTGTAGCTGGGAGGACATCGGTGGGCTCGAAAATGTTAAACGTGAACTTCAAGAGACTGTTCAATATCCA GTGGAGCACCCGGAGAAATTCGAGAAGTTTGGTATGTCACCTTCAAAGGGAGTTCTGTTCTATGGTCCCCCTGGTTGTGGAAAGACCCTGTTGGCTAAGG CTATTGCCAATGAGTGCCAAGCTAACTTCATCAGCATCAAAGGTCCTGAGCTCCTCACTATGTGGTTCGGTGAGAGTGAAGCAAATGTACGAGAAATCTT CGACAAGGCTAGACAGTCTGCACCTTGTGTTCTCTTCTTCGATGAGCTCGACTCCATTGCTACTCAGAGAGGAGGCAGCGTTGGTGATGCTGGTGGTGCA GCCGATCGTGTGCTGAACCAGCTTCTAACCGAAATGGATGGTATGTCCGCAAAGAAGACCGTCTTCATCATCGGGGCAACAAACAGACCCGACATCATCG ATTCTGCACTCCTGAGGCCCGGCCGTCTTGACCAGCTCATCTACATCCCTCTCCCAGACGAGGATTCTCGCTACCAGATCTTCAAGGCTGCCTTGAGGAA GTCCCCACTTGCTAAAGAGGTCGACTTGAGGGCACTTGCCAAGTACACTCAAGGATTCAGTGGTGCTGATATCACCGAGATCTGCCAGCGTGCCTGCAAG TACGCCATTCGGGAGAACATCGAGAAGGACATTGAAAAGGAGAGGAAGAGGGATGCGAACCCGGAAGCTATGGAGGAGGACGAGGAGGAGATTGCGGAGA TCAAGGCTGCACACTTTGAGGAGTCGATGAAGTACGCCCGCCGCAGTGTGAGCGATGCTGATATCCGCAAGTACCAGGCTTTTGCCCAGACTCTGCAGCA GTCCAGGGGTTTCGGTTCTGAGTTTAGGTTCTCGGAGACCGCTGCCACAGGTGGAGCAACGGCAGCTGCTGACCCTTTCTCAACTTCAGCAGGTGGAGCC GATGAAGATGACTTGTATAGTTAG
AA sequence Show only first row Show all	>Lus10021441 pacid=23179143 polypeptide=Lus10021441 locus=Lus10021441.g ID=Lus10021441.BGIv1.0 annot-version=v1.0 MADKAESSDSKSGKRDFSTAILERKKSPNRLVVDEAVNDDNSVVAMHPDTMEKLQLFRGDTILIKGKKRKDTICIALADETCDQPKIRMNKVVRSNLRVR LGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETDPGDYCVVAPDTEIFCEGEPVRREDED RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDEVDL ERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDTIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNCSWEDIGGLENVKRELQETVQYP VEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGSVGDAGGA ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRYQIFKAALRKSPLAKEVDLRALAKYTQGFSGADITEICQRACK YAIRENIEKDIEKERKRDANPEAMEEDEEEIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSETAATGGATAAADPFSTSAGGA DEDDLYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021441 [exp]	0	1
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10037597 [exp]	1.4	0.8986
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10014433 [exp]	1.7	0.8707
AT5G22070			Core-2/I-branching beta-1,6-N-...		Lus10004106 [exp]	2.0	0.8601
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10019252 [exp]	7.1	0.8741
AT1G44960			SNARE associated Golgi protein...		Lus10028709 [exp]	12.0	0.8276
AT4G02425			unknown protein		Lus10030370 [exp]	12.4	0.8210
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10029887 [exp]	14.0	0.7875
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014573 [exp]	15.0	0.8080
AT2G36300			Integral membrane Yip1 family ...		Lus10021374 [exp]	23.0	0.8598
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10037125 [exp]	23.5	0.8027

Compare expression of checked genes

Lus10021441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.