Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28315 499 / 6e-179 Nucleotide/sugar transporter family protein (.1) AT1G06890 399 / 5e-139 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G30460 391 / 3e-136 Nucleotide/sugar transporter family protein (.1.2) AT4G09810 198 / 8e-61 Nucleotide-sugar transporter family protein (.1) AT1G21070 192 / 1e-58 Nucleotide-sugar transporter family protein (.1) AT1G34020 192 / 2e-58 Nucleotide-sugar transporter family protein (.1) AT5G42420 188 / 8e-57 Nucleotide-sugar transporter family protein (.1.2) AT4G39390 183 / 5e-55 NST-K1, ATNST-KT1 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) AT1G76670 183 / 6e-55 Nucleotide-sugar transporter family protein (.1) AT5G57100 119 / 3e-30 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041315 [exp] 577 / 0 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10037397 [exp] 570 / 0 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041314 [exp] 449 / 4e-160 AT2G28315 420 / 1e-148 Nucleotide/sugar transporter family protein (.1) Lus10008596 [exp] 353 / 1e-120 AT2G30460 569 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10009918 [exp] 336 / 5e-115 AT1G06890 493 / 7e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10005790 [exp] 189 / 3e-57 AT4G09810 536 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006810 [exp] 189 / 7e-57 AT4G09810 542 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10035824 [exp] 187 / 2e-56 AT1G21070 545 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10036606 [exp] 182 / 1e-54 AT1G21070 547 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G211900 [exp] 512 / 0 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.009G011100 [exp] 492 / 4e-176 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.013G154800 [exp] 396 / 5e-138 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.019G128900 [exp] 392 / 1e-136 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.005G196500 [exp] 202 / 3e-62 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G064700 [exp] 199 / 3e-61 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G260300 [exp] 188 / 1e-56 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G000500 [exp] 187 / 1e-56 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G086700 [exp] 187 / 1e-56 AT4G39390 457 / 1e-162 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.007G077900 [exp] 183 / 4e-55 AT4G39390 521 / 0.0 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10021464 pacid=23179243 polypeptide=Lus10021464 locus=Lus10021464.g ID=Lus10021464.BGIv1.0 annot-version=v1.0 ATGGGGGAAATGGGAGGAATCCAATTGGGAGTCATTGGGGCTTTGTTCCTTTCAGTTGCTTCATCAGTCTCCATTGTCATATGCAACAAGGCTCTAATGA GCAATCTAGGCTTCCCCTTTGCCACGACTCTGACGAGCTGGCACCTCGTGGTCACGTTCTGCACCCTCCACGTCGCCCACCGATTCAACCTATTTGAGTC GAAGTCGGTTGACATGAAAACTGTGGTTCTTTTCGGGTTGCTCAATGGGATCTCGATTGGGTTCCTTAATCTCAGTTTAGGGTTCAACTCCATTGGGTTT TATCAGATGACAAAACTTGCAATCATCCCTTTTACTGTGTTGTTGGAGACCCTTTTCCTCAACAAGCACTTCAGCCAAAAGGTAAAGTTTTCCCTCTTCC TATTGCTAGTTGGAGTTGGGATTGCCTCAGTGACAGATCTACAGCTCAACTGCCTTGGAACCATCCTGTCCCTTCTTGCCATCATAACAACCTGTGTTGG CCAAATTTTGACAAACACAATACAGAGGAAGCTGAATGTGTCATCAACACAACTTCTATACCAATCAGCACCATTCCAAGCAGCAGTGCTCTTTGTCTCA GGACCAATGGTTGACCGATTCCTCACCACCAAGAATGTCTTTGCTTACAAGTACAACCCTACAGTTGTGATATTCATCATGCTATCATGCTTGATAGCAG TGGCGGTGAACTTCAGCACATTCATGGTGATCGGGAAGACATCCCCAGTGACATATCAAGTTCTAGGCCACTTGAAGACTTGTCTTGTCTTGCTGTTGGG CTACACATTGTTGCATGACCCTTTCAACATTAGGAACATTGTTGGCATACTTGTCGCCATGGCTGGTATGGTCTTGTACTCTTATTTCTGCACCCAAGAG GGCAAGAAGAAGAAATCCTCCATTGACATCTCTACTCTCGGCGGGCCTCAGGTGAAGGACAAAGAAGATGGTGTGGTTAAACCATTGAAGGGAGGAGGAC AAGAGAAGGAGAATCTTGAGGCAAAGAAATTATCAAAGGATTCCATTGTTTAG
AA sequence Show only first row Show all	>Lus10021464 pacid=23179243 polypeptide=Lus10021464 locus=Lus10021464.g ID=Lus10021464.BGIv1.0 annot-version=v1.0 MGEMGGIQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLVVTFCTLHVAHRFNLFESKSVDMKTVVLFGLLNGISIGFLNLSLGFNSIGF YQMTKLAIIPFTVLLETLFLNKHFSQKVKFSLFLLLVGVGIASVTDLQLNCLGTILSLLAIITTCVGQILTNTIQRKLNVSSTQLLYQSAPFQAAVLFVS GPMVDRFLTTKNVFAYKYNPTVVIFIMLSCLIAVAVNFSTFMVIGKTSPVTYQVLGHLKTCLVLLLGYTLLHDPFNIRNIVGILVAMAGMVLYSYFCTQE GKKKKSSIDISTLGGPQVKDKEDGVVKPLKGGGQEKENLEAKKLSKDSIV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28315			Nucleotide/sugar transporter f...		Lus10021464 [exp]	0	1
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10019122 [exp]	1.0	0.9819
					Lus10016571 [exp]	2.2	0.9687
AT1G67510			Leucine-rich repeat protein ki...		Lus10037006 [exp]	2.4	0.9791
AT5G02640			unknown protein		Lus10025282 [exp]	3.5	0.9692
AT4G11950			Protein of unknown function (D...		Lus10014138 [exp]	3.5	0.9682
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10017428 [exp]	7.1	0.9664
AT2G17940			Plant protein of unknown funct...		Lus10041916 [exp]	7.5	0.9751
AT5G46220			Protein of unknown function (D...		Lus10023312 [exp]	8.5	0.9661
AT1G76250			unknown protein		Lus10016006 [exp]	10.2	0.9449
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10016302 [exp]	10.5	0.9579

Compare expression of checked genes

Lus10021464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.