Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32460 215 / 1e-62 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) AT5G55020 210 / 1e-60 MYB ATMYB120 myb domain protein 120 (.1) AT4G26930 203 / 3e-59 MYB ATMYB97 myb domain protein 97 (.1) AT3G11440 205 / 2e-58 MYB AtMYB65 myb domain protein 65 (.1) AT5G06100 201 / 5e-58 MYB ATMYB33 myb domain protein 33 (.1.2.3) AT2G26960 189 / 1e-53 MYB ATMYB81 myb domain protein 81 (.1) AT1G22640 153 / 3e-42 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G13480 152 / 7e-42 MYB ATMYB79 myb domain protein 79 (.1) AT3G01530 150 / 1e-41 MYB ATMYB57 myb domain protein 57 (.1) AT3G30210 151 / 2e-41 MYB ATMYB121 myb domain protein 121 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040063 [exp] 602 / 0 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10026787 [exp] 214 / 3e-62 AT3G11440 301 / 4e-96 myb domain protein 65 (.1) Lus10036103 [exp] 213 / 8e-62 AT3G11440 307 / 1e-98 myb domain protein 65 (.1) Lus10008685 [exp] 213 / 4e-60 AT3G11440 357 / 3e-115 myb domain protein 65 (.1) Lus10026142 [exp] 216 / 1e-59 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10027189 [exp] 209 / 1e-59 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10035275 [exp] 204 / 1e-57 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10041435 [exp] 155 / 5e-42 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10023711 [exp] 153 / 9e-42 AT3G24310 247 / 2e-81 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036000 [exp] 216 / 2e-62 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.003G189700 [exp] 213 / 2e-61 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.002G228700 [exp] 210 / 9e-61 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Potri.009G018700 [exp] 209 / 2e-60 AT5G06100 286 / 1e-90 myb domain protein 33 (.1.2.3) Potri.001G224500 [exp] 205 / 1e-58 AT3G11440 298 / 1e-94 myb domain protein 65 (.1) Potri.013G130900 [exp] 197 / 2e-54 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3) Potri.001G346600 [exp] 156 / 2e-44 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.010G064000 [exp] 154 / 8e-43 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.008G122100 [exp] 154 / 6e-42 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.017G071500 [exp] 150 / 6e-42 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10021539 pacid=23159107 polypeptide=Lus10021539 locus=Lus10021539.g ID=Lus10021539.BGIv1.0 annot-version=v1.0 ATGATATCAACAACAAACAAAGGTGAAGGAGGATTGTCAGGGTTTTGCACAAGTGTTGGAGGAGGAGGAGAATTTAATGCATTTATAAATAATAATAATA ATAATGATAATAATAATGTAGTTGAGAACCCACAAGAGTTGATCCAGAAAGGCGGGAAGTTGGGAATTAACAACAATGGCGGAAACTGTGGGTTGAAGAA AGGTCCTTGGACGGCGGAAGAAGATACAGTGCTAATGGAATATGTGAGGAAGCATGGAGAAGGGAACTGGAACGCAGTTCAAAGGAATTCAGGGCTTAAT CGTTGTGGGAAGAGCTGTAGACTACGTTGGGCTAATCACTTGCGACCTAATCTTAAGAAGGGTTCTTTCACCCCGCAAGAAGAACGACTCATTATTGAAC TCCATGCCAAAATGGGCAACAAATGGGCTCGCATGGCTAACATGCTTCCTGGAAGAACAGACAATGAAATCAAGAACTATTGGAATACAAGAATTAAGAG GCACCAAAGACAAGGACTCCCTCTGTATCCTCCTGACATCCAACCTCGACAATGTTTCCAAACACCTCCTGACTCCTACCATCAATTTCCACCAGTCACC AACTCATTTGCCTTCCAATCAGAGGCAGAAGAACAAGTTCCTCACCAGGATGCCTCTTCCTCTATCAATGTTTTGCCACTTTTCGAATACCCTCAGCACC ATCAACAACATCAACATAATCATTACTCAGACTCAACTCCTAGCACCCCATTCACTTTCCAAACCCAAAAAATTGATCCATTTTCCACTCATGTTTCCCC TATCCCATCTCCTTGTTCTATTTCCAACAACAATAGTAATAATAATAATAATATGTCTCATCACCATATCCCAACTCTAGCTTTCCTCGACTTCTCCTTC CCAAGGCCAACTCCAATCCAGCAATCCGCTAATCGCTTCAAGAGATTTGCTTCTTGTGGCGACATTGCCAATTCTGTGGTGGAAACTGACAACAACCATG TTCCTCATTCTCATCATTTCCCTAGTGTGTCCACTGCTCCGCCTCTTCCACCTCATCATCCTATCCACTCTCCCAACAACAACAACAACAACATTACACA TTTCAGAAATTCTCATCATCAACCACAACGATTATACGACAACAATAACAACAACCTCCTACTGAGCAGCATCGTTAGTAGTGATCAGTTCCACCAAGAG ATACAGAAGGAGAACGAAGAAATGTGCTCTCTTTTGGCTACCATGTCTCGACAGCTCCCTTCTAACCACAATTATGGCGATGTTACTATGCTCCACACTG GTCAATTCAATACTACACAATTTGATAAAGACAGTGAACATGATGAAAACAACATCAACAACATGATGAGGATGAGGAATAAGGACAAGGCTCACAACAT CTTGTATGCCACTACAATAGCAAATGGAGGTAGCATGTATGGAGGCTTGTTGGAGGATCTTTGGCAAGAGGCGAATGCAAACTTGGTAGTGCATAATAAC AATAATTTACTTTTTATGCAACAGGGACATCATGATCAGGTAAATGATGAAGACAATGATAGTTTCCTGCCACCAATTGATCAAAATAACAACATTACTA AGACTGATATTAGTGATGATGACGAGTTAAGCAAGCTGATAGAGGATAATGAAACTAATCATCTTAAATTTTGTGGAGAAGGCGGGGATCAAATAGGATC CAATGATCCTTCTTCAGTAGTGACAACAGAGGATCGAGTCAATTTCGATCTTCATCACATGTTTTCATTTCTTCCTACAACAACAGATCTTGACAAACCT CCCCTGAAGAGCTGTTCATGGGATAACTTGCCAGAGATTTGCTAA
AA sequence Show only first row Show all	>Lus10021539 pacid=23159107 polypeptide=Lus10021539 locus=Lus10021539.g ID=Lus10021539.BGIv1.0 annot-version=v1.0 MISTTNKGEGGLSGFCTSVGGGGEFNAFINNNNNNDNNNVVENPQELIQKGGKLGINNNGGNCGLKKGPWTAEEDTVLMEYVRKHGEGNWNAVQRNSGLN RCGKSCRLRWANHLRPNLKKGSFTPQEERLIIELHAKMGNKWARMANMLPGRTDNEIKNYWNTRIKRHQRQGLPLYPPDIQPRQCFQTPPDSYHQFPPVT NSFAFQSEAEEQVPHQDASSSINVLPLFEYPQHHQQHQHNHYSDSTPSTPFTFQTQKIDPFSTHVSPIPSPCSISNNNSNNNNNMSHHHIPTLAFLDFSF PRPTPIQQSANRFKRFASCGDIANSVVETDNNHVPHSHHFPSVSTAPPLPPHHPIHSPNNNNNNITHFRNSHHQPQRLYDNNNNNLLLSSIVSSDQFHQE IQKENEEMCSLLATMSRQLPSNHNYGDVTMLHTGQFNTTQFDKDSEHDENNINNMMRMRNKDKAHNILYATTIANGGSMYGGLLEDLWQEANANLVVHNN NNLLFMQQGHHDQVNDEDNDSFLPPIDQNNNITKTDISDDDELSKLIEDNETNHLKFCGEGGDQIGSNDPSSVVTTEDRVNFDLHHMFSFLPTTTDLDKP PLKSCSWDNLPEIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10021539 [exp]	0	1
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10020041 [exp]	5.7	0.8539
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10017638 [exp]	11.9	0.7265
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10004841 [exp]	12.2	0.8391
AT1G61100			disease resistance protein (TI...		Lus10025112 [exp]	12.7	0.8199
					Lus10023803 [exp]	13.4	0.8337
AT4G05440		EDA35	embryo sac development arrest ...		Lus10000812 [exp]	16.0	0.8131
AT1G13810			Restriction endonuclease, type...		Lus10033589 [exp]	16.1	0.7882
AT5G10530			Concanavalin A-like lectin pro...		Lus10020447 [exp]	22.3	0.8192
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	22.6	0.8284
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	24.5	0.8257

Compare expression of checked genes

Lus10021539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.