Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25890 132 / 9e-36 AP2_ERF CRF11 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) AT1G68550 124 / 1e-32 AP2_ERF CRF10 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) AT1G49120 79 / 2e-16 AP2_ERF CRF9 cytokinin response factor 9, Integrase-type DNA-binding superfamily protein (.1) AT4G23750 77 / 7e-16 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT5G53290 74 / 1e-14 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT4G11140 73 / 2e-14 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT3G61630 73 / 3e-14 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT4G39780 72 / 3e-14 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G46310 72 / 5e-14 AP2_ERF CRF5 cytokinin response factor 5 (.1) AT1G12890 71 / 5e-14 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035018 [exp] 588 / 0 AT3G25890 150 / 2e-42 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Lus10034316 [exp] 310 / 8e-105 AT1G68550 151 / 2e-43 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) Lus10041456 [exp] 291 / 2e-97 AT1G68550 146 / 3e-41 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) Lus10033938 [exp] 77 / 8e-16 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10017550 [exp] 75 / 4e-15 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10014054 [exp] 74 / 6e-15 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10027573 [exp] 74 / 1e-14 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10039324 [exp] 73 / 4e-14 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10037448 [exp] 72 / 1e-13 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G120100 [exp] 261 / 1e-85 AT3G25890 124 / 4e-33 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Potri.010G125600 [exp] 251 / 2e-81 AT3G25890 95 / 6e-22 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Potri.015G054500 [exp] 76 / 2e-15 AT1G49120 61 / 4e-10 cytokinin response factor 9, Integrase-type DNA-binding superfamily protein (.1) Potri.001G094800 [exp] 76 / 2e-15 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.003G136300 [exp] 74 / 2e-14 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.006G054500 [exp] 73 / 2e-14 AT3G57600 234 / 1e-76 Integrase-type DNA-binding superfamily protein (.1) Potri.001G163700 [exp] 72 / 9e-14 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.019G131300 [exp] 71 / 1e-13 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.003G071700 [exp] 71 / 2e-13 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3) Potri.014G094500 [exp] 71 / 2e-13 AT2G46310 163 / 3e-48 cytokinin response factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10021678 pacid=23180298 polypeptide=Lus10021678 locus=Lus10021678.g ID=Lus10021678.BGIv1.0 annot-version=v1.0 ATGAAGCGAATCTCTCCTTCTGAAGACTCCTTAATGGGGTCAAAGGTTCGGAAAGTCCGTGTGATCTATCAGGATCCATATGCTACTGATACAGAGTCCA GTGACGATGAATCGAAGCATTCCATTCAAGCTTTGAAGAAGAAACCAAGACGATTTGTTCGTGAGCTTAGTCTCCCTGCCGTGAGTGGTGCTGTATCTCC ATCCAACACTGGTGAGCAGCAGGAATCATCCTCTCAAGATAGCAACAACAGTGTTAAGAACCATGTGAGGAGGAGAAGGGCGTGTGCTGCCACTAATTCG GTCTCAAAGACTGGACCGAAGATGCCTGTGGGTGTTAGGCAGAGGAAGTGGGGGAAATGGGCTGCAGAGATTCGCAACCCCCGCACCAAATCGAGACAAT GGCTGGGTACTTTCAGCACCCTAGAGGAGGCTGCACAAGCTTACGAGGCCAAGAAGAGAGAATATGATGCTGCATTGGCCATGGAAGGCTCCCAGAAGAA CGAGTCTTCCTCAACTACCAGCAAAAACCAACTTTTCAGTGCTTCCACTACTGATAATGACTCAGAGAGTGTTCTGTCCCATACTTCACCAGCTTCAGTC CTTGAACTGGACACCTCGGTGGTATCAAACTTGAATAATGAGGATTTGAGCAAGAAAGATGATGGCTTTGGCTTGCTGGAAGAAGAGGGTTTACAAGCAA CTGGTATAGTTGCAGACCTGGAGATACCTGATTTCAGCTTCATTGACGAGGCATTTGTGTCTTCTTCTTGTCCTCCGGTGAATGAAGACCTGGACTTGGG TCTTGATTTCACCAACGTTATCGACGAGTTTGGACGGATGTACGACGATTACTGTGGGATCCACACCGATCAGCTCGACCTCCTTGGGTTTGAAGGAGAC ATGATACCAACTGAGCTTCCGGATTTTGATTTCGACTTCAGCAGCGAGGAGTTTGCCTATTTGGATAATCATCATCAACAGCCACAACAACCCCTCAACA TCGCTTGCCCATAA
AA sequence Show only first row Show all	>Lus10021678 pacid=23180298 polypeptide=Lus10021678 locus=Lus10021678.g ID=Lus10021678.BGIv1.0 annot-version=v1.0 MKRISPSEDSLMGSKVRKVRVIYQDPYATDTESSDDESKHSIQALKKKPRRFVRELSLPAVSGAVSPSNTGEQQESSSQDSNNSVKNHVRRRRACAATNS VSKTGPKMPVGVRQRKWGKWAAEIRNPRTKSRQWLGTFSTLEEAAQAYEAKKREYDAALAMEGSQKNESSSTTSKNQLFSASTTDNDSESVLSHTSPASV LELDTSVVSNLNNEDLSKKDDGFGLLEEEGLQATGIVADLEIPDFSFIDEAFVSSSCPPVNEDLDLGLDFTNVIDEFGRMYDDYCGIHTDQLDLLGFEGD MIPTELPDFDFDFSSEEFAYLDNHHQQPQQPLNIACP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10021678 [exp]	0	1
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10035018 [exp]	1.0	0.9679
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10021677 [exp]	2.0	0.9518
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10004978 [exp]	2.8	0.9299
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10035017 [exp]	3.0	0.9372
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	3.9	0.9259
AT5G41270			unknown protein		Lus10030018 [exp]	8.9	0.8817
AT5G03420			5'-AMP-activated protein kinas...		Lus10023003 [exp]	8.9	0.9192
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10018932 [exp]	10.1	0.9007
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	11.5	0.9230
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10022899 [exp]	13.0	0.9091

Compare expression of checked genes

Lus10021678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.