Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25550 272 / 3e-89 GARP myb-like transcription factor family protein (.1) AT1G68670 269 / 6e-88 GARP myb-like transcription factor family protein (.1) AT1G13300 229 / 1e-72 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT2G03500 182 / 9e-54 GARP Homeodomain-like superfamily protein (.1) AT3G25790 130 / 1e-34 GARP myb-like transcription factor family protein (.1) AT4G37180 116 / 1e-29 GARP Homeodomain-like superfamily protein (.1.2) AT1G49560 111 / 7e-28 GARP Homeodomain-like superfamily protein (.1) AT5G59570 71 / 9e-14 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT3G16857 72 / 2e-13 GARP ARR1 response regulator 1 (.1.2) AT4G28610 71 / 3e-13 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035043 [exp] 546 / 0 AT1G68670 281 / 7e-93 myb-like transcription factor family protein (.1) Lus10043304 [exp] 182 / 6e-53 AT2G03500 341 / 3e-113 Homeodomain-like superfamily protein (.1) Lus10041485 [exp] 169 / 2e-48 AT1G25550 288 / 2e-94 myb-like transcription factor family protein (.1) Lus10034280 [exp] 165 / 6e-48 AT1G25550 266 / 3e-87 myb-like transcription factor family protein (.1) Lus10012056 [exp] 152 / 1e-42 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10019452 [exp] 142 / 2e-37 AT2G03500 231 / 3e-69 Homeodomain-like superfamily protein (.1) Lus10009334 [exp] 127 / 8e-34 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2) Lus10020995 [exp] 129 / 9e-34 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10019639 [exp] 123 / 2e-32 AT4G37180 206 / 4e-64 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117500 [exp] 313 / 4e-105 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1) Potri.010G128900 [exp] 309 / 4e-103 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.018G074200 [exp] 165 / 1e-46 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.006G155200 [exp] 165 / 1e-46 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.009G106600 [exp] 162 / 3e-46 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.007G039400 [exp] 141 / 1e-38 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.005G134600 [exp] 132 / 3e-35 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.004G144800 [exp] 129 / 1e-33 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.010G105600 [exp] 78 / 2e-15 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.008G135500 [exp] 74 / 4e-14 AT4G16110 370 / 3e-119 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10021699 pacid=23180323 polypeptide=Lus10021699 locus=Lus10021699.g ID=Lus10021699.BGIv1.0 annot-version=v1.0 ATGGATTCTCTCCATCACAAGAAGCGCAGCAACGAGTACGCCGGCGCCTTGGAGGAAGAGCGTCGCAAGATTATCATGTTCCAGCGCGAACTCCCTCTTT CTTTGGAGCTTGTTACCCAAGCGATCGAAGCTTGTCGGAGAGACCTTTCCGGTACAACGACGGAACACGAAAAATCCGACTGCTCCGAGCAGACCTCCGG AGAATGTCCTGTGACTGAAGAATTCATCCCTATTATTAAGGCAAACAGCTCCTCCTGTGATGACGAGGACGACAATTATGAGAAGAAACGCCCACTGAAA CGAACCAGAAGCAAATCTGACTGGCTGAGATCTGTTCAGCTGTGGAACCAACCACCAGATCCCCCGTCGCCGAAACAAGCTGTACCGAGGAAGGCACTGG TGACGGAGGTGAAGAGGAATGGCGCATTTCAGCCTTTCCAGAAAGAGAAAAGCAACGGTGACGATAACATCACGGTGGCGCCTGCGGCTGTTGTTTCCGC GCCTCCGTCCAAGGTCCTATTGCCCTCCGCCATGAGTTCTACAGCTGACGCGACACCTACCGCTGCTGGTCCCAGCAGCGTCGTCAGCGATAGCGAGAAC AAACAAAAGGAGGACGAGGATAAAGAAAGCCAGGCTAAGAGAAAACGTAGGCGGTGCTGGTCTCCAGAACTTCACAGAAGATTCCTTCACGCTCTCCAAC AGCTCGGCGGTTCACACGTGGCAACTCCGAAGCAAATTAGGGAGCTAATGAAGGTAGATGGGCTCACTAATGATGAGGTTAAGAGCCATTTACAGAAATT CCGTTTGCACACAAGGCGACCGAGTCACAGTGTCCAAAACGGTAGCAACTCGGCAGGAGGTCCGCAGTTTGTAGTCGTGGGCGGGATATGGGTCCCGCCG GTGGAGTACGCAGCGGCCGTTCCTGATGCTCCGCCGCCGGTTGCTACAGCTGAAAAGCAGCCGGGTAGCAATTCAGATGATGAGTTGCAACCTGAAGGGG ATGGAGATCATTCGTGTTCTCCTAGCACGTCTTCCTCTGTCCATACGCCAACTAGCTCGTCGGCGTTGTAA
AA sequence Show only first row Show all	>Lus10021699 pacid=23180323 polypeptide=Lus10021699 locus=Lus10021699.g ID=Lus10021699.BGIv1.0 annot-version=v1.0 MDSLHHKKRSNEYAGALEEERRKIIMFQRELPLSLELVTQAIEACRRDLSGTTTEHEKSDCSEQTSGECPVTEEFIPIIKANSSSCDDEDDNYEKKRPLK RTRSKSDWLRSVQLWNQPPDPPSPKQAVPRKALVTEVKRNGAFQPFQKEKSNGDDNITVAPAAVVSAPPSKVLLPSAMSSTADATPTAAGPSSVVSDSEN KQKEDEDKESQAKRKRRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRPSHSVQNGSNSAGGPQFVVVGGIWVPP VEYAAAVPDAPPPVATAEKQPGSNSDDELQPEGDGDHSCSPSTSSSVHTPTSSSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25550	GARP		myb-like transcription factor ...		Lus10021699 [exp]	0	1
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	2.0	0.9292
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	2.0	0.9428
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	2.4	0.9328
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10011824 [exp]	2.6	0.8871
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	3.9	0.9319
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Lus10018364 [exp]	5.0	0.9121
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10016359 [exp]	6.9	0.8829
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10030095 [exp]	6.9	0.8953
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002908 [exp]	7.9	0.8769
AT5G20790			unknown protein		Lus10007378 [exp]	12.4	0.8325

Compare expression of checked genes

Lus10021699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.