Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13260 353 / 2e-121 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT1G25560 353 / 3e-121 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT1G68840 350 / 8e-120 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT3G25730 325 / 2e-110 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT1G50680 162 / 8e-47 AP2_ERF AP2/B3 transcription factor family protein (.1) AT1G51120 154 / 1e-43 AP2_ERF AP2/B3 transcription factor family protein (.1) AT1G01030 144 / 6e-40 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT3G61970 142 / 9e-40 B3 NGA2 NGATHA2, AP2/B3-like transcriptional factor family protein (.1) AT2G46870 142 / 1e-39 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT5G06250 134 / 5e-37 B3 AP2/B3-like transcriptional factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041487 [exp] 394 / 6e-137 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10034276 [exp] 226 / 4e-73 AT1G68840 233 / 4e-76 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Lus10036282 [exp] 168 / 2e-49 AT1G50680 268 / 2e-88 AP2/B3 transcription factor family protein (.1) Lus10021326 [exp] 135 / 8e-37 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2) Lus10004226 [exp] 124 / 6e-32 AT5G06250 183 / 4e-55 AP2/B3-like transcriptional factor family protein (.1.2) Lus10026212 [exp] 109 / 2e-28 AT1G51120 150 / 4e-44 AP2/B3 transcription factor family protein (.1) Lus10025226 [exp] 76 / 1e-14 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10022741 [exp] 70 / 6e-13 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10003037 [exp] 67 / 1e-12 AT2G46310 122 / 8e-34 cytokinin response factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G129200 [exp] 397 / 1e-137 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.008G117100 [exp] 393 / 2e-136 AT1G25560 422 / 6e-148 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.018G109201 [exp] 185 / 8e-56 AT1G51120 286 / 8e-95 AP2/B3 transcription factor family protein (.1) Potri.006G186301 [exp] 182 / 1e-54 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1) Potri.003G212800 [exp] 176 / 4e-52 AT1G51120 312 / 7e-105 AP2/B3 transcription factor family protein (.1) Potri.014G107200 [exp] 142 / 6e-39 AT2G46870 241 / 6e-77 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.002G181600 [exp] 142 / 1e-38 AT2G46870 264 / 6e-86 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.011G149700 [exp] 142 / 2e-38 AT2G46870 218 / 2e-67 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.001G452200 [exp] 138 / 6e-37 AT2G46870 198 / 4e-60 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.016G074500 [exp] 132 / 2e-35 AT2G36080 219 / 9e-70 AP2/B3-like transcriptional factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10021707 pacid=23180256 polypeptide=Lus10021707 locus=Lus10021707.g ID=Lus10021707.BGIv1.0 annot-version=v1.0 ATGGAATGCATCAGCTCATCTTCCACCACCGACGACAGCACAACCACCGCCACCACCACCGGCGTCGAAAAGTCCCACACCCCTCGGGAGTCCCTCTGTC GGGTTGGAAGCGGCGCCAGTAGCGTAGTACTCGACCCGGAGTCCGAGATCGAAGCAGCCGAATCCCGGAAACTCCCTTCATCCAAATACAAAGGAGTCGT CCCGCAACCCAACGGCCGGTGGGGCTCCCAGATCTACGAGAAGCACCACCGCGTATGGCTCGGCACTTTCAACGACGAGGACTCCGCCGCCCGCGCCTAC GACGTCGCCGTCCTCCGCTTCCGCGGCCGCGATGCGGTCACTAATTTCAACCCCCCTCCGACTGCTTCCTCATCCGACGAGGCCGCGTTCCTCAGCGCCC ATTCCAAGGCCGAGATCGTCGACATGCTGAGGAAGCACACCTACGACGACGAGCTAGAACAGAGCCGCCGCCAAGGGAAAAAACAGAGCCATAATCAAAA TAATGCAGTCGGGTCGTCCGGGTCGGGTGGGTCCGCCCGGGATGATCTGTTCGAGAAGACGGTGACTCCGAGCGACGTGGGGAAACTAAACCGGTTGGTG ATCCCTAAGCAGCAGGCGGAGAAGCATTTCCCGATTCAGGGCCGTGGCGGCAGCGGAGGAGGGGTACTGTTGAATTTCAAGGACGGCGGGGGGAAAGTGT GGAGATTTCGGTACTCGTACTGGAACAGCAGCCAGAGCTACGTGTTGACGAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGGGTTTGAGAGCCGGCGATAT TGTGAGGTTCCAAAGATCTGGGGAGGAGCAGCAGCTCTACATTGACTTCTCCAAGTCAACGAGTAGTAACGTGGTCGCGGAGTTGGATCGGGGTTCGGTC CAACCGGTTCAGATGGTTCGGTTGTTTGGGGTCAATATATTTGAACTGGCCGGGAGTGGTGGTGGAGGGTGTAATGGGAAGCGATTGATGGAGACAACGG CGGCGGCTTTCGAGTGCAGTAAAAAACAGAGGATTATTATTGACGTCTTGTAG
AA sequence Show only first row Show all	>Lus10021707 pacid=23180256 polypeptide=Lus10021707 locus=Lus10021707.g ID=Lus10021707.BGIv1.0 annot-version=v1.0 MECISSSSTTDDSTTTATTTGVEKSHTPRESLCRVGSGASSVVLDPESEIEAAESRKLPSSKYKGVVPQPNGRWGSQIYEKHHRVWLGTFNDEDSAARAY DVAVLRFRGRDAVTNFNPPPTASSSDEAAFLSAHSKAEIVDMLRKHTYDDELEQSRRQGKKQSHNQNNAVGSSGSGGSARDDLFEKTVTPSDVGKLNRLV IPKQQAEKHFPIQGRGGSGGGVLLNFKDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLRAGDIVRFQRSGEEQQLYIDFSKSTSSNVVAELDRGSV QPVQMVRLFGVNIFELAGSGGGGCNGKRLMETTAAAFECSKKQRIIIDVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10021707 [exp]	0	1
					Lus10027664 [exp]	1.4	0.9631
					Lus10005609 [exp]	1.7	0.9641
					Lus10024552 [exp]	7.9	0.9563
AT5G13825			unknown protein		Lus10001690 [exp]	8.8	0.9004
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10002389 [exp]	9.4	0.9347
AT2G29970			Double Clp-N motif-containing ...		Lus10038320 [exp]	11.3	0.8733
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	11.6	0.9326
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	13.2	0.9287
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	14.5	0.9201
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10018867 [exp]	14.9	0.7712

Compare expression of checked genes

Lus10021707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.