Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23290 178 / 2e-54 MYB ATMYB70 myb domain protein 70 (.1) AT3G50060 177 / 3e-54 MYB ATMYB77 myb domain protein 77 (.1) AT4G37260 177 / 5e-54 MYB ATMYB73 myb domain protein 73 (.1) AT5G67300 171 / 1e-51 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT3G55730 160 / 1e-46 MYB ATMYB109 myb domain protein 109 (.1) AT3G09230 160 / 2e-46 MYB ATMYB1 myb domain protein 1 (.1) AT2G39880 151 / 2e-43 MYB ATMYB25 myb domain protein 25 (.1) AT5G17800 125 / 5e-34 MYB ATMYB56 myb domain protein 56 (.1) AT4G33450 123 / 8e-34 MYB ATMYB69 myb domain protein 69 (.1) AT5G02320 127 / 2e-33 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032764 [exp] 373 / 1e-131 AT4G37260 182 / 5e-56 myb domain protein 73 (.1) Lus10010238 [exp] 181 / 1e-55 AT4G37260 271 / 4e-90 myb domain protein 73 (.1) Lus10007503 [exp] 177 / 1e-54 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10010055 [exp] 178 / 2e-54 AT4G37260 259 / 2e-85 myb domain protein 73 (.1) Lus10014103 [exp] 175 / 4e-54 AT4G37260 213 / 2e-68 myb domain protein 73 (.1) Lus10040940 [exp] 174 / 7e-54 AT4G37260 176 / 2e-54 myb domain protein 73 (.1) Lus10010260 [exp] 177 / 1e-53 AT5G67300 288 / 5e-96 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) Lus10030336 [exp] 176 / 6e-53 AT4G37260 290 / 1e-96 myb domain protein 73 (.1) Lus10028979 [exp] 171 / 3e-52 AT4G37260 181 / 1e-55 myb domain protein 73 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G035100 [exp] 239 / 4e-79 AT4G37260 183 / 1e-56 myb domain protein 73 (.1) Potri.002G128900 [exp] 231 / 3e-76 AT4G37260 179 / 2e-55 myb domain protein 73 (.1) Potri.007G048900 [exp] 183 / 4e-56 AT4G37260 273 / 2e-90 myb domain protein 73 (.1) Potri.005G142600 [exp] 181 / 3e-55 AT4G37260 246 / 7e-80 myb domain protein 73 (.1) Potri.002G122600 [exp] 177 / 3e-54 AT4G37260 258 / 6e-85 myb domain protein 73 (.1) Potri.014G022500 [exp] 177 / 3e-54 AT4G37260 226 / 3e-72 myb domain protein 73 (.1) Potri.009G096000 [exp] 174 / 1e-53 AT4G37260 222 / 1e-71 myb domain protein 73 (.1) Potri.008G070900 [exp] 174 / 2e-53 AT4G37260 173 / 2e-52 myb domain protein 73 (.1) Potri.001G300200 [exp] 167 / 8e-51 AT4G37260 203 / 1e-64 myb domain protein 73 (.1) Potri.010G195000 [exp] 162 / 4e-47 AT3G55730 295 / 7e-97 myb domain protein 109 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10021762 pacid=23154311 polypeptide=Lus10021762 locus=Lus10021762.g ID=Lus10021762.BGIv1.0 annot-version=v1.0 ATGGACCCAATGCTGCATAACAACAACAACATGTGCTCAACCTCTTCTACAACCTCGGATTCTTCCTCCTCCGATTCCGCCGCCACCGGTTCAGCCAAGC GCACCGACAGGATCAAGGGCCCCTGGAGCGCCGAGGAGGACCGGGTCCTCATCCACCTCGTCAACCGCCACGGCCCAAGGAACTGGTCCTTGATTAGCCG CTACATCAACGGCCGCTCGGGGAAGTCATGTCGCCTCCGTTGGTGTAATCAGCTCTGCCCCACTGTACAGCACCGCCCTTTCTCCCCCGCCGAGGACCAC ACCATCCTCGCTGCCCACGCTCGTTACGGTAACCGCTGGGCAACTATAGCTCGCCTTCTCCCTGGCCGGACCGACAATGCTATCAAGAACCACTGGAACT CCACTCTCAAGCGACGCGCCTTTGCCGGACACGGACAGACCTCCTCCTCCTCGCCGCCGCAGGCGGCGGTGTTTCATCAGCGGGCGGCGTCCGACGGGAA CTACAGTACTCAGGAGTACTGTTGGAATTACGGTGAGGGGTCTTTGTCGCCAGCGGTGCCAGCGGCAGTTGTGGATGTGGATGAGGAGGAAGCGCTGACG ACGCTGACTCTTGGCCCGCCGGGGATGGGAAGCGGTGGAGGTGGACAGGGGATGAGTAATGCGGCGGAGGAGAGGAGGGCGGAGAGTATGCCAGCTGGAT TTTGGGATGTTATGCGAGGCGTCATTGCCAAAGAAGTTAGAGAGTATGTGAATTCCACCATGTCGTCGGAGGAGAGCCCCACACCTACCGCCGCCGCCAG TTACTACCATTAA
AA sequence Show only first row Show all	>Lus10021762 pacid=23154311 polypeptide=Lus10021762 locus=Lus10021762.g ID=Lus10021762.BGIv1.0 annot-version=v1.0 MDPMLHNNNNMCSTSSTTSDSSSSDSAATGSAKRTDRIKGPWSAEEDRVLIHLVNRHGPRNWSLISRYINGRSGKSCRLRWCNQLCPTVQHRPFSPAEDH TILAAHARYGNRWATIARLLPGRTDNAIKNHWNSTLKRRAFAGHGQTSSSSPPQAAVFHQRAASDGNYSTQEYCWNYGEGSLSPAVPAAVVDVDEEEALT TLTLGPPGMGSGGGGQGMSNAAEERRAESMPAGFWDVMRGVIAKEVREYVNSTMSSEESPTPTAAASYYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23290	MYB	ATMYB70	myb domain protein 70 (.1)		Lus10021762 [exp]	0	1
AT3G47670			Plant invertase/pectin methyle...		Lus10008625 [exp]	10.1	0.8332
AT5G65100	EIL		Ethylene insensitive 3 family ...		Lus10014331 [exp]	15.0	0.8070
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Lus10002711 [exp]	19.8	0.8271
AT3G52230			unknown protein		Lus10028838 [exp]	23.3	0.8327
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020734 [exp]	25.5	0.7737
					Lus10043270 [exp]	47.3	0.7961
AT1G18390			Protein kinase superfamily pro...		Lus10022432 [exp]	48.5	0.8096
AT5G16920			Fasciclin-like arabinogalactan...		Lus10039146 [exp]	50.1	0.7374
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10029692 [exp]	77.8	0.7987
AT2G02500		MCT, ATMEPCT, I...	2-C-METHYL-D-ERYTHRITOL 4-PHOS...		Lus10026271 [exp]	84.4	0.7368

Compare expression of checked genes

Lus10021762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.