Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60020 387 / 2e-131 LAC17, ATLAC17 laccase 17 (.1) AT2G29130 333 / 2e-110 LAC2, ATLAC2 laccase 2 (.1) AT2G38080 243 / 8e-76 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G03260 236 / 3e-73 LAC11 laccase 11 (.1) AT2G30210 219 / 2e-66 LAC3 laccase 3 (.1) AT5G58910 216 / 8e-66 LAC16 laccase 16 (.1) AT5G01190 216 / 3e-65 LAC10 laccase 10 (.1) AT2G40370 209 / 9e-63 LAC5 laccase 5 (.1) AT5G05390 206 / 1e-61 LAC12 laccase 12 (.1) AT3G09220 191 / 7e-56 LAC7 laccase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034614 [exp] 505 / 5e-178 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10034439 [exp] 473 / 2e-165 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10019122 [exp] 473 / 3e-165 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10024378 [exp] 342 / 8e-114 AT5G60020 853 / 0.0 laccase 17 (.1) Lus10010850 [exp] 325 / 2e-101 AT5G60020 856 / 0.0 laccase 17 (.1) Lus10035517 [exp] 251 / 1e-78 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10023189 [exp] 244 / 4e-76 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10002227 [exp] 239 / 3e-74 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10017175 [exp] 236 / 2e-73 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G401300 [exp] 426 / 2e-146 AT5G60020 904 / 0.0 laccase 17 (.1) Potri.001G054600 [exp] 425 / 3e-146 AT5G60020 905 / 0.0 laccase 17 (.1) Potri.011G120200 [exp] 419 / 5e-144 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.011G120300 [exp] 418 / 2e-143 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.001G401100 [exp] 417 / 4e-143 AT5G60020 881 / 0.0 laccase 17 (.1) Potri.001G341600 [exp] 412 / 2e-141 AT5G60020 896 / 0.0 laccase 17 (.1) Potri.006G087500 [exp] 367 / 1e-123 AT5G60020 806 / 0.0 laccase 17 (.1) Potri.001G184300 [exp] 362 / 2e-121 AT2G29130 830 / 0.0 laccase 2 (.1) Potri.009G156800 [exp] 358 / 4e-120 AT2G29130 831 / 0.0 laccase 2 (.1) Potri.009G156600 [exp] 358 / 4e-120 AT2G29130 831 / 0.0 laccase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10021800 pacid=23159317 polypeptide=Lus10021800 locus=Lus10021800.g ID=Lus10021800.BGIv1.0 annot-version=v1.0 ATGTTGTTCCTAGCAGTGATATGTTTGCTTGCATTTGCCGAGTCAGTACATGCCGCCACAAGGCACTATAAGCTTGATGTAATGCAACAAAATGTGACGC GGTTGTGCCACACCAAGACTATGGTGACTGTTAATGGACATTTTCCGGGGCCTAGGATCGTGGCCAGGGAAGGGGATCGGCTTCTAATCAAAGTGGTCAA TCATACAGGGCAAAGCTATGTTTACAACTACACGATAGTTGGTCAAAGTGGCACCCTTTGGTGGCATGCCCACATCTCGTGGCTCAGATCGACCGTTTAT GATCCCCTCATCATCCTCCCAAAGCTTGGTGTCCCTTACGCTTTCAAGAAACCTTACAAAGAAGTTCCCATAGTCTTTGGGGAGTGGTTTAATGCAGATA CTGAAGCAATCATCAACCAGGCCATGCAAACAGGTGGAGGTACGAATGCATCCGATGCATACACCATTAATGGACTCCCAGGACCTTTATATAACTGCTC TGCAAAAGCCATTCAACACATACGTTATCCTCATAGCTCCGGGCCAAACCACGAACGCTCTGCTGAAAGCCAAGCCGCATCACCCAACGCCACATTTCTC ATGTTGGCCTCCCCGTATGCGATAGGGCAAGGCACTTTCGACAACTCCACAGTCGCTGGAATCATGGAATACGATAATGAATCCCTGCCTTCTTCTCCAC ATTCCATCCAAAGTATCCCAGTCTTCAAACCAACCTTACCGGCTCTCAACGACACTGCCTTCGCCACAAACTTCACCAGCAAGCTTCGCAGTCTGGGAAC CAAACAATTCCCAGCCAACGTTCCACAGCAAGTGGATAGGCAGTTCTTCTTTACAGTTGGGTTAGGAACCAACCCTTGCCAGAAGAACCGAACCTGCCAG AGACCCAATGGAACGATGTTTGCAGCATCAGTCAACAATTCGACATCCCAACCACGGCTTTGCTCCATGCACATTACACCGCTCCCTAGCCAGAAGCTGC TTCCCCCGCCAGCTGACCTTCCCAAGTGCTGA
AA sequence Show only first row Show all	>Lus10021800 pacid=23159317 polypeptide=Lus10021800 locus=Lus10021800.g ID=Lus10021800.BGIv1.0 annot-version=v1.0 MLFLAVICLLAFAESVHAATRHYKLDVMQQNVTRLCHTKTMVTVNGHFPGPRIVAREGDRLLIKVVNHTGQSYVYNYTIVGQSGTLWWHAHISWLRSTVY DPLIILPKLGVPYAFKKPYKEVPIVFGEWFNADTEAIINQAMQTGGGTNASDAYTINGLPGPLYNCSAKAIQHIRYPHSSGPNHERSAESQAASPNATFL MLASPYAIGQGTFDNSTVAGIMEYDNESLPSSPHSIQSIPVFKPTLPALNDTAFATNFTSKLRSLGTKQFPANVPQQVDRQFFFTVGLGTNPCQKNRTCQ RPNGTMFAASVNNSTSQPRLCSMHITPLPSQKLLPPPADLPKC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10021800 [exp]	0	1
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	3.0	0.9294
AT1G79620			Leucine-rich repeat protein ki...		Lus10023849 [exp]	5.5	0.9281
AT5G55950			Nucleotide/sugar transporter f...		Lus10016648 [exp]	5.9	0.9155
AT5G05450			P-loop containing nucleoside t...		Lus10040952 [exp]	7.2	0.9200
AT5G53340			Galactosyltransferase family p...		Lus10032350 [exp]	9.5	0.8845
					Lus10040842 [exp]	13.7	0.9214
AT5G53340			Galactosyltransferase family p...		Lus10033935 [exp]	15.3	0.9101
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10011780 [exp]	16.5	0.8919
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10025431 [exp]	19.5	0.8667
AT1G63300			Myosin heavy chain-related pro...		Lus10017237 [exp]	19.5	0.8194

Compare expression of checked genes

Lus10021800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.