Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50250 899 / 0 FTSH1 FTSH protease 1 (.1) AT5G42270 883 / 0 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT2G30950 516 / 1e-174 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 509 / 7e-172 FTSH8 FTSH protease 8 (.1) AT5G15250 506 / 7e-171 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G26140 417 / 1e-135 FTSH4 FTSH protease 4 (.1) AT2G29080 417 / 8e-135 FTSH3 FTSH protease 3 (.1) AT5G53170 416 / 3e-134 FTSH11 FTSH protease 11 (.1) AT1G07510 407 / 9e-131 FTSH10 FTSH protease 10 (.1) AT3G47060 390 / 2e-124 FTSH7 FTSH protease 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012277 [exp] 913 / 0 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10016003 [exp] 910 / 0 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10034572 [exp] 767 / 0 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 508 / 2e-171 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 507 / 1e-169 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001573 [exp] 426 / 5e-138 AT1G07510 1194 / 0.0 FTSH protease 10 (.1) Lus10016516 [exp] 422 / 2e-137 AT1G07510 1111 / 0.0 FTSH protease 10 (.1) Lus10018210 [exp] 404 / 9e-130 AT5G58870 1049 / 0.0 FTSH protease 9 (.1) Lus10039334 [exp] 398 / 2e-127 AT5G53170 1087 / 0.0 FTSH protease 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012000 [exp] 911 / 0 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 901 / 0 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 512 / 3e-173 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G215100 [exp] 506 / 9e-171 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 504 / 8e-170 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.006G227700 [exp] 411 / 9e-134 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.015G020700 [exp] 410 / 4e-132 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.009G033600 [exp] 410 / 6e-132 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 407 / 6e-131 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.012G000700 [exp] 396 / 7e-127 AT5G53170 1076 / 0.0 FTSH protease 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10021824 pacid=23159365 polypeptide=Lus10021824 locus=Lus10021824.g ID=Lus10021824.BGIv1.0 annot-version=v1.0 ATGGCGTCCGCTCTCTCCTCCAACCCTCTACTCTCTTCCACCATCTTCTCCAAAACCCACATCCTAATTTCCCCTCCAACTCCCAAAACCACCAAATCCA CATTCCATCTCCCACCAAAATCTCGACCTTGTCGCGCTATATTGAGCAAGCAAACCGATTCCGAATCCATTTCCACCTCAAACTCATTCCCTTCCCGAGC TACTCTAGCTGCTGCTCTCCTCTTCTCTTCACTAACCCCACAAGCTCTCGCCCTCGACAACTCTCCTCCACCTCTGACCCAGCCAATCGTAATTGAAGCT CAGCCCACTAAACCTTCTTCCCCAAATTCCCCCTTCGCCCAAAACCTCCTCCTCACAGCTCCAAAGCCTCAATCCCAACCGGCCTCCGACCTCCCCGAGG GAACCCAATGGCGCTACAGCGAGTTCCTGAACGCGGTCAAGAAAGGGAAAATAGAGCGGGTTCGATTCAGCAAAGACGGCTCTACCCTCCAGTTAACCGC CATCGACGGACCTCGCGCCTCCGCTATCCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTACCTGTTCCGGC GGGGGCAAGCCGGGCCGGGTGGACCCGGCGGGTTGGGCGGCCCAATGGACTTCGGCCGATCGAAATCCAAGTTCCAGGAAGTCCCGGAGACCGGCGTAAC GTTCGCCGATGTTGCCGGCGCCGATCAGGCCAAATTAGAGCTCCAAGAGGTTGTGGATTTCCTTAAGAACCCGGATAAGTACACTGCATTGGGAGCTAAG ATTCCGAAGGGGTGTTTGTTAGTCGGCCCGCCCGGTACCGGGAAAACGCTTCTGGCAAGAGCCGTGGCCGGAGAGGCGGGGACTCCTTTCTTCTCCTGCG CTGCTTCGGAATTCGTGGAGCTGTTTGTCGGGGTTGGAGCTTCGAGGGTTAGGGATTTGTTTGAGAAGGCTAAGTCGAAAGCTCCTTGCATTGTGTTCAT TGACGAGATTGATGCTGTGGGGAGGCAGAGAGGGGCTGGAATGGGCGGTGGAAATGATGAAAGGGAACAGACTATAAATCAGCTGTTGACCGAAATGGAT GGGTTTTCGGGGAATTCCGGGGTGATCGTCTTGGCTGCTACGAATCGGCCTGATGTTCTTGATTCGGCTCTGTTGAGGCCTGGGAGGTTTGATAGGCAAG TGACTGTTGATAGGCCTGATGTTTCTGGCAGAGTCAAGATTCTTCAGGTGCATTCAAGAGGGAAGGCACTTGGGAAAGATGTGGACTTTGAAAAGATTGC ACGGAGAACTCCAGGTTTTACTGGAGCCGATCTGCAGAATCTGATGAACGAAGCAGCCATTCTTGCAGCTAGGCGTGACCTTAAGGAAATAAGCAAAGAT GAGATATCTGATGCTCTGGAGAGGATTATTGCAGGACCAGAGAAGAAGAACGCTGTTGTTTCCGAGGAGAAGAAAAAGCTAGTTGCCTATCATGAGGCTG GACATGCTTTGGTTGGCGCTCTGATGCCTGAATATGACCCCGTGGCCAAGATTTCCATCATTCCCCGCGGACAGGCTGGTGGACTTACGTTCTTCGCTCC AAGTGAGGAGCGGCTCGAGTCTGGACTGTACAGCAGAAGCTACCTGGAGAATCAGATGGCTGTAGCACTTGGAGGAAGAGTAGCGGAAGAAGTGATATTC GGACAAGAACATGTGACAACAGGGGCATCTAACGACTTCATGCAAGTATCAAGAGTGGCAAGGCAAATGGTAGAGAGATTCGGGTTCAGCAAGAAAATCG GCCAAGTGGCTATCGGTGGAGGTGGTGGAAACCCTTTCTTGGGCCAACAGATGTCGTCACAGAAAGATTACTCCATGGCGACTGCGGATGTTGTGGACGC AGAGGTGAGGGAGCTGGTGGAGACGGCTTACGAAAGGGCCACGGAAATCATAACGACCCACATTGATATATTGCACAAGCTGGCTCAGCTTCTTATAGAG AAGGAAACAGTGGATGGGGAAGAGTTCATGAGTCTCTTCATTGATGGAAAAGCTGAGCTTTATGTTGCTTGA
AA sequence Show only first row Show all	>Lus10021824 pacid=23159365 polypeptide=Lus10021824 locus=Lus10021824.g ID=Lus10021824.BGIv1.0 annot-version=v1.0 MASALSSNPLLSSTIFSKTHILISPPTPKTTKSTFHLPPKSRPCRAILSKQTDSESISTSNSFPSRATLAAALLFSSLTPQALALDNSPPPLTQPIVIEA QPTKPSSPNSPFAQNLLLTAPKPQSQPASDLPEGTQWRYSEFLNAVKKGKIERVRFSKDGSTLQLTAIDGPRASAILXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLFRRGQAGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAK IPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMD GFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVSGRVKILQVHSRGKALGKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKD EISDALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIF GQEHVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGGGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYERATEIITTHIDILHKLAQLLIE KETVDGEEFMSLFIDGKAELYVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10021824 [exp]	0	1
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001054 [exp]	1.4	0.9788
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10034572 [exp]	1.4	0.9774
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001420 [exp]	2.4	0.9756
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10009471 [exp]	4.0	0.9659
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10029680 [exp]	4.9	0.9584
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10000593 [exp]	6.9	0.9414
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	6.9	0.9490
AT1G33110			MATE efflux family protein (.1...		Lus10020307 [exp]	7.2	0.9276
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10021115 [exp]	7.4	0.9589
AT5G52420			unknown protein		Lus10039248 [exp]	8.1	0.9378

Compare expression of checked genes

Lus10021824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.