Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44430 89 / 3e-19 DNA-binding bromodomain-containing protein (.1) AT3G60110 72 / 7e-14 DNA-binding bromodomain-containing protein (.1) AT2G42150 63 / 7e-11 DNA-binding bromodomain-containing protein (.1) AT1G61215 59 / 1e-09 BRD4 bromodomain 4 (.1) AT3G57980 52 / 4e-07 DNA-binding bromodomain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010335 [exp] 250 / 7e-78 AT2G44430 320 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10031796 [exp] 59 / 3e-09 AT2G44430 234 / 5e-67 DNA-binding bromodomain-containing protein (.1) Lus10011227 [exp] 50 / 1e-06 AT1G61215 288 / 7e-93 bromodomain 4 (.1) Lus10018457 [exp] 49 / 3e-06 AT1G61215 288 / 6e-93 bromodomain 4 (.1) Lus10039453 [exp] 41 / 0.0003 ND / Lus10009436 [exp] 0 / 1 ND 37 / 0.009
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G023100 [exp] 96 / 1e-21 AT2G44430 280 / 3e-85 DNA-binding bromodomain-containing protein (.1) Potri.001G229300 [exp] 92 / 2e-20 AT2G44430 301 / 4e-93 DNA-binding bromodomain-containing protein (.1) Potri.T042048 [exp] 60 / 1e-09 AT3G60110 113 / 5e-26 DNA-binding bromodomain-containing protein (.1) Potri.003G212500 [exp] 60 / 1e-09 AT3G60110 113 / 6e-26 DNA-binding bromodomain-containing protein (.1) Potri.001G013600 [exp] 58 / 4e-09 AT3G57980 127 / 2e-30 DNA-binding bromodomain-containing protein (.1) Potri.004G036900 [exp] 57 / 9e-09 AT1G61215 323 / 1e-105 bromodomain 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10021860 pacid=23158009 polypeptide=Lus10021860 locus=Lus10021860.g ID=Lus10021860.BGIv1.0 annot-version=v1.0 ATGAGGAATACATCCCATCCATCACCACCATCATCAAGCTTCTCATGGTCCATCGTGCGCGCTTCGGTTCCTCGGTTATCTCGCCAGCCCTTAGCGCAAC AACAGGAGGAGGGGCTTAGGCATAATCGTAAATCCCCAGTCTGCCGTCACTCGGACGGGCGCCGCCAGACTTCTCGCCTCGATCTCCAACACCGCCACCC ACTTCGATGTGGCCGACCGAGACATGATGACAGCCACTACGGCCTCCGAGTTTACCGACATGGAACATCGGTACGGCCCCAGAGCCTTCGAAAGGGGAAT CGGAAAGGGCCAGTATTAGAGCCTGGAGGGGCGAAACGACAGACTGAAATATTGAACAATAATAACCCATTCCAATTCATGGCGGAGGAGAGCCTGGGCC ACCACCAACTCCGCTGTCAATCATCTTCCGCCGCCGACGAGCAGTCTCAAACATGGGGGACCTGGGAAGAGCTGTTGTTGGCCTTCGCAGTCAAGCGGCA CGGCTTCGCCAGCTGGGAATCCGTCGCCGCCGAACTACAGACCAAGACTTCCCTACCCCAAGTCTTGGCAACAGCCGAACGTTGTAGACAGAAGTACCAG GACCTCAACCGCCGGGCATACCCGTCGCCGGCGAGCTTGTCAGCAGCGGCTCCGTCGAAAAAGCGTTCGCTGCAGCTCAAGGTGAAGAAATTAGAGGATG AACGGGAGCATGGGTCGCAGGAGAAGGATGAAGGTAAGCTATCTAAGCCAGATCTGCCGTTGGAGAGGCACAGATCGGAGGCGGATGCGAAGTTGAGCGT CTCGATGTCGAGCAGGGAGTCGGATAGGGACAACCGGTCGGTGAACGAGTCGAATTCAACGGCGTGGGGACGAGTCGAATTCAACGGCGTCGGGAGCGAA GAAGGCGGCGGATGGGGTGAAGTTGGAAGATCCGAAGACGAGCGGGTCGAATTCGAAGAGGGAGGAGGAGGAGACTGA
AA sequence Show only first row Show all	>Lus10021860 pacid=23158009 polypeptide=Lus10021860 locus=Lus10021860.g ID=Lus10021860.BGIv1.0 annot-version=v1.0 MRNTSHPSPPSSSFSWSIVRASVPRLSRQPLAQQQEEGLRHNRKSPVCRHSDGRRQTSRLDLQHRHPLRCGRPRHDDSHYGLRVYRHGTSVRPQSLRKGN RKGPVLEPGGAKRQTEILNNNNPFQFMAEESLGHHQLRCQSSSAADEQSQTWGTWEELLLAFAVKRHGFASWESVAAELQTKTSLPQVLATAERCRQKYQ DLNRRAYPSPASLSAAAPSKKRSLQLKVKKLEDEREHGSQEKDEGKLSKPDLPLERHRSEADAKLSVSMSSRESDRDNRSVNESNSTAWGRVEFNGVGSE EGGGWGEVGRSEDERVEFEEGGGGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44430			DNA-binding bromodomain-contai...		Lus10021860 [exp]	0	1
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10002875 [exp]	15.9	0.6121
AT5G67280		RLK	receptor-like kinase (.1)		Lus10019816 [exp]	26.1	0.6678
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Lus10035413 [exp]	204.4	0.5509

Compare expression of checked genes

Lus10021860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.