Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13390 618 / 0 SKS11 SKU5 similar 11 (.1) AT1G55570 618 / 0 SKS12 SKU5 similar 12 (.1) AT3G13400 617 / 0 SKS13 SKU5 similar 13 (.1) AT1G55560 602 / 0 SKS14 SKU5 similar 14 (.1) AT1G21850 421 / 2e-143 SKS8 SKU5 similar 8 (.1) AT1G21860 418 / 2e-142 SKS7 SKU5 similar 7 (.1) AT1G76160 409 / 1e-138 SKS5 SKU5 similar 5 (.1) AT5G66920 404 / 1e-136 SKS17 SKU5 similar 17 (.1) AT1G41830 403 / 2e-136 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT4G22010 399 / 9e-135 SKS4 SKU5 similar 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010337 [exp] 848 / 0 AT1G55570 803 / 0.0 SKU5 similar 12 (.1) Lus10021864 [exp] 664 / 0 AT1G55570 814 / 0.0 SKU5 similar 12 (.1) Lus10010338 [exp] 657 / 0 AT1G55570 815 / 0.0 SKU5 similar 12 (.1) Lus10036492 [exp] 645 / 0 AT3G13400 808 / 0.0 SKU5 similar 13 (.1) Lus10010358 [exp] 641 / 0 AT3G13400 807 / 0.0 SKU5 similar 13 (.1) Lus10022465 [exp] 411 / 2e-139 AT5G66920 829 / 0.0 SKU5 similar 17 (.1) Lus10022648 [exp] 409 / 9e-139 AT1G21850 729 / 0.0 SKU5 similar 8 (.1) Lus10035282 [exp] 404 / 7e-137 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10030045 [exp] 404 / 2e-136 AT1G76160 796 / 0.0 SKU5 similar 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G224100 [exp] 657 / 0 AT1G55570 855 / 0.0 SKU5 similar 12 (.1) Potri.001G000600 [exp] 647 / 0 AT1G55570 850 / 0.0 SKU5 similar 12 (.1) Potri.001G000500 [exp] 638 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.004G180500 [exp] 427 / 7e-146 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 420 / 8e-143 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 414 / 2e-140 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.007G038300 [exp] 410 / 5e-139 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.002G013700 [exp] 408 / 3e-138 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 404 / 1e-136 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.004G010100 [exp] 400 / 4e-135 AT4G22010 844 / 0.0 SKU5 similar 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10021863 pacid=23157965 polypeptide=Lus10021863 locus=Lus10021863.g ID=Lus10021863.BGIv1.0 annot-version=v1.0 ATGAAATTTTTTATTTCTCTCAAATCAAAGGAGTGCTTGTTCTTCTCCAATCGTTCAGATTTCAAGCTGAAAGCCTTCAGTGATTCCGTCTGGACTACAT GTCATGATATTCGAAAGTCTCTCACATGGGCGGGCGGCGGGTTCGGCGGGCTGGGAATCAATAGCCGCGAATTGATCCCGATCCCGTACGACATTCCGGA AGATGACTACACGGTCATCATCAACGACTGGTACCCAAAGAGCCACACAGCCTTGAAAAACCTGCTCGACAGCGGACGCACATTGGGGAAACCCGAAGCC GTCCTCATCAACGGCCAGATCGCTAAAGGCGACGGATCCGACGTGCCGCTCTTCACCATGAAGGCTGGAAAGACGTACAAGTACAGAATATGTAACGCCG GGTTGAAAACGTCTCTCAACTTTAGGATCCAGGGGCACACCATGAAGCTGGTCGAGATGGAAGGGTCCCACGTGGTTCAAAATTATTACCAATCGTTAGA CGTGCATGTCGGTCAATGCATGGCTGTCTTGGTCACCGCTGACCAACCCGGTAATAAAGATTACGTCATGGTTGCTTCCACCCGGTTCACCAAGGGATAC GTTCGCGTTGGTAAAGGAATAGTCCGTTACGAAGGAAGCAACGGCGTCGTTTCGAGCGAACCAATCCCTGACGCTCCCGTAGGCTGGGCTTGGTCTTTGA ATCAGTTCCGTTCTTTGAGGTGGAATCTAACGTCCAACGCTGCTAGGCCCAACCCACAGGGTTCTTACCACTACGGTCAGATCGAGATCACCCGGACAAT CAAGCTGGTCAACTCGGCCGGGTTAGTTAACGGCAAGCTGAGGTACGCGATTAACGGAGTTTCCCACGTGGACGGAGCGACTCCTTTGAAGCTGGCCGAG TATTTCGGAATATCCGACATGGTGTTTAAATACGACACGATTCCCGACATGCCGAAGAATGACGATAACGTCAAGATTGTGGTGCAGCCCGATGTGTTGA ACTTGACGTTCAGGAACTTTGTGGAGATAGTGTTTGAGAATCACGAGAAGAGCATCCAGTCGTGGCATTTGGATGGGTACTCGTTCTTCACGGTCGGGTC GGAGCCGGGAGTGTGGGGACCGGAGAAGAGGAAGAACTATAATTTGCTTGACGCGGTGAGCAGGACGACGGTGCAGGTGTTCCCGAAATCGTGGGCGGCG ATAATGCTGACGTTTGACAATGCGGGGATGTGGAACATAAGGTCGGAGATGTGGGAGAGAACGTACTTGGGACAGCAGATGTATGTGAGTGTGTTGTCGC CGGAAAGGTCGTTGAGGGATGAGTATAATATGCCTGAGTCAAGCATGCTGTGTGGTCTTGTGGCTGGCTTGCCCAAACCTGCTCCTTACTCTGGCACCTA A
AA sequence Show only first row Show all	>Lus10021863 pacid=23157965 polypeptide=Lus10021863 locus=Lus10021863.g ID=Lus10021863.BGIv1.0 annot-version=v1.0 MKFFISLKSKECLFFSNRSDFKLKAFSDSVWTTCHDIRKSLTWAGGGFGGLGINSRELIPIPYDIPEDDYTVIINDWYPKSHTALKNLLDSGRTLGKPEA VLINGQIAKGDGSDVPLFTMKAGKTYKYRICNAGLKTSLNFRIQGHTMKLVEMEGSHVVQNYYQSLDVHVGQCMAVLVTADQPGNKDYVMVASTRFTKGY VRVGKGIVRYEGSNGVVSSEPIPDAPVGWAWSLNQFRSLRWNLTSNAARPNPQGSYHYGQIEITRTIKLVNSAGLVNGKLRYAINGVSHVDGATPLKLAE YFGISDMVFKYDTIPDMPKNDDNVKIVVQPDVLNLTFRNFVEIVFENHEKSIQSWHLDGYSFFTVGSEPGVWGPEKRKNYNLLDAVSRTTVQVFPKSWAA IMLTFDNAGMWNIRSEMWERTYLGQQMYVSVLSPERSLRDEYNMPESSMLCGLVAGLPKPAPYSGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10021863 [exp]	0	1
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10010879 [exp]	1.4	0.7719
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033078 [exp]	8.6	0.6566
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Lus10030729 [exp]	10.5	0.6266
AT1G34580			Major facilitator superfamily ...		Lus10020934 [exp]	17.4	0.6514
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042320 [exp]	17.9	0.6390
					Lus10020192 [exp]	19.4	0.6408
AT2G34930			disease resistance family prot...		Lus10002758 [exp]	23.0	0.6309
AT2G28310			Protein of unknown function (D...		Lus10041316 [exp]	25.5	0.6120
AT2G34930			disease resistance family prot...		Lus10000236 [exp]	25.8	0.6389
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10042984 [exp]	26.1	0.6013

Compare expression of checked genes

Lus10021863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.