Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55570 803 / 0 SKS12 SKU5 similar 12 (.1) AT3G13390 801 / 0 SKS11 SKU5 similar 11 (.1) AT3G13400 794 / 0 SKS13 SKU5 similar 13 (.1) AT1G55560 780 / 0 SKS14 SKU5 similar 14 (.1) AT1G21860 570 / 0 SKS7 SKU5 similar 7 (.1) AT1G76160 562 / 0 SKS5 SKU5 similar 5 (.1) AT1G21850 558 / 0 SKS8 SKU5 similar 8 (.1) AT1G41830 557 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT5G66920 555 / 0 SKS17 SKU5 similar 17 (.1) AT4G22010 551 / 0 SKS4 SKU5 similar 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010338 [exp] 1054 / 0 AT1G55570 815 / 0.0 SKU5 similar 12 (.1) Lus10036492 [exp] 896 / 0 AT3G13400 808 / 0.0 SKU5 similar 13 (.1) Lus10010358 [exp] 892 / 0 AT3G13400 807 / 0.0 SKU5 similar 13 (.1) Lus10010337 [exp] 855 / 0 AT1G55570 803 / 0.0 SKU5 similar 12 (.1) Lus10021863 [exp] 665 / 0 AT1G55570 631 / 0.0 SKU5 similar 12 (.1) Lus10016770 [exp] 567 / 0 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10022465 [exp] 566 / 0 AT5G66920 829 / 0.0 SKU5 similar 17 (.1) Lus10035282 [exp] 552 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10034560 [exp] 548 / 0 AT1G76160 894 / 0.0 SKU5 similar 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G224100 [exp] 887 / 0 AT1G55570 855 / 0.0 SKU5 similar 12 (.1) Potri.001G000600 [exp] 871 / 0 AT1G55570 850 / 0.0 SKU5 similar 12 (.1) Potri.001G000500 [exp] 868 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.004G180500 [exp] 579 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.007G038300 [exp] 569 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.005G247700 [exp] 558 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 557 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 554 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.004G010100 [exp] 553 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.007G038200 [exp] 552 / 0 AT4G37160 771 / 0.0 SKU5 similar 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10021864 pacid=23158081 polypeptide=Lus10021864 locus=Lus10021864.g ID=Lus10021864.BGIv1.0 annot-version=v1.0 ATGGCGACTTGTCCAACGAGTCTGTTGTTGCTAACTCTAGCCTCGTTAATTTGTACAATCCATGGAGAAGATCCATACCTCTTCTTCACATGGAAAGTCA CCTACGGTACGCGCTCCCCGCTCGGCTCCCCGGAGCAGGTGATCCTCATCAACGACGAGTTCCCCGGCCCTGCCCTAAACACCACCACCAACAACAATGT GGTCATCAACGTTTTCAACAACCTCGACGAGCCGTTGCTCATCACGTGGAGTGGGATCCAGCAGAGGAAGAACTCGTGGCAGGATGGCATGCCGGGTACT CAGTGCCCCATCCCACCTGGCACCAACTACACTTATCATTTCCAAGTCAAGGACCAGATCGGCAGCTTCTTGTACTACCCTTCCACCGCGATGCACAGGT CAGCAGGTGGCTTCGGTGGGATCCACATCAACAGCCGTCTCCTCATCCCTGTCCCGTACGCTGATCCTGAAGCTGACTACACTGTCATCATCAATGATTG GTATACGAAGACCCATTCCGCTATCCGAAACATGCTCGACAGCGGCCGAACCTTGGCCAGACCGGAAGGGGTCTTGCTCAATGGCAAGCACGCGAAAGGC GACGGTAAAGACGAGCCGCTCTTTACGATGAAGGCAGGGAAGACTTACAAGTACAGGATTTGTAACGCCGGGTTGAAGACCTCGCTCAATTTCAGGATCC AAGGCCATACGATGAAGCTTGTCGAGATGGAAGGGTCGCACGTTGTACAGAACACGTACGACTCGCTCGATATCCACGTCGGAGGGTGCATGGCTGTGCT TGTCACTGCAGATCAGGATCCAAAAGACTACTACATGGTCGCGTCCACTAGGTTCACCAAGACTGTCACTACCGGAAAAGGGATCGTCCGTTACGAAGGT GGGAAAGAACCACCGCACAGCGAGATCCCTTCTGCTCCTGTGGGATGGGCCTGGTCGCTAAATCAGTTCAGATCCTTCAGGTGGAACCTGACTGCCAGTG CGGCCAGGCCTAACCCACAAGGGTCTTACCATTACGGCCAGATCAACATCACCCGTACGATCAAGCTGGTGAACACTGCTGGACGATCCAACGGGAAGTT GAGGTACGCTTTCAACGGTATCTCCCATGTGGACCAACCCACCCCGCTCAAGCTCGCTGAGTACTACCACGTTGCCGATAAGGTTTTCAAGTATGACACG ATGAAGGACAACCCGCCTGCCTCCGACAATGTCGACATCGTGATGCAGCCCAATGTGATGAACTTCACATTCAGGAACTTCGTCGAGATCATCTTCGAGA ACCACGAAAAGACCATTCAGTCCTTCCACTTGGACGGCTACTCCTTCTTTGCTGTCGGCATCGAGCCAGGGATCTGGTCGCCCGCAAAGAGGAAGAACTA CAATCTCCTCGATGCAGTGAGCAGGACGACGATCCAGGTGTACCCGAAATCCTGGGCCGCAATACTGTTGACGTTCGACAATGCAGGGATGTGGAACGTG AGGTCAGAGATGTGGGAGAGGTTCTACTTGGGACAACAATTCTACGTGAGCACGCTGTCGCCAGGACTGTCTCTGAGAGATGAGTACAGTCTTCCCGACG GTTCTTTGCTCTGTGGAATCGTCAAGGACATGCCTAAGCCTGCTCCATACACCCTCTAG
AA sequence Show only first row Show all	>Lus10021864 pacid=23158081 polypeptide=Lus10021864 locus=Lus10021864.g ID=Lus10021864.BGIv1.0 annot-version=v1.0 MATCPTSLLLLTLASLICTIHGEDPYLFFTWKVTYGTRSPLGSPEQVILINDEFPGPALNTTTNNNVVINVFNNLDEPLLITWSGIQQRKNSWQDGMPGT QCPIPPGTNYTYHFQVKDQIGSFLYYPSTAMHRSAGGFGGIHINSRLLIPVPYADPEADYTVIINDWYTKTHSAIRNMLDSGRTLARPEGVLLNGKHAKG DGKDEPLFTMKAGKTYKYRICNAGLKTSLNFRIQGHTMKLVEMEGSHVVQNTYDSLDIHVGGCMAVLVTADQDPKDYYMVASTRFTKTVTTGKGIVRYEG GKEPPHSEIPSAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGQINITRTIKLVNTAGRSNGKLRYAFNGISHVDQPTPLKLAEYYHVADKVFKYDT MKDNPPASDNVDIVMQPNVMNFTFRNFVEIIFENHEKTIQSFHLDGYSFFAVGIEPGIWSPAKRKNYNLLDAVSRTTIQVYPKSWAAILLTFDNAGMWNV RSEMWERFYLGQQFYVSTLSPGLSLRDEYSLPDGSLLCGIVKDMPKPAPYTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10021864 [exp]	0	1
					Lus10027893 [exp]	1.0	0.9724
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10032973 [exp]	1.4	0.9583
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10027895 [exp]	3.3	0.9083
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10028330 [exp]	5.3	0.9545
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032621 [exp]	5.5	0.9434
					Lus10009927 [exp]	6.2	0.9555
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10043352 [exp]	7.3	0.9370
AT5G51105			Protein of unknown function (D...		Lus10019549 [exp]	8.2	0.8070
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10009408 [exp]	9.2	0.8345
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002393 [exp]	10.4	0.8627

Compare expression of checked genes

Lus10021864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.