Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23250 228 / 5e-75 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT2G31180 217 / 3e-71 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT1G06180 215 / 2e-70 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT1G56160 198 / 4e-63 MYB ATMYB72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, myb domain protein 72 (.1) AT1G16490 197 / 5e-63 MYB ATMYB58 myb domain protein 58 (.1) AT3G61250 196 / 3e-62 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT1G79180 194 / 1e-61 MYB ATMYB63 myb domain protein 63 (.1) AT3G02940 192 / 1e-60 MYB ATMYB107 myb domain protein 107 (.1) AT1G34670 192 / 9e-60 MYB ATMYB93 myb domain protein 93 (.1) AT4G05100 187 / 2e-58 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041145 [exp] 363 / 5e-129 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10021185 [exp] 239 / 1e-79 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10011820 [exp] 238 / 4e-79 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10003557 [exp] 216 / 9e-70 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10033889 [exp] 214 / 3e-69 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10042561 [exp] 201 / 1e-65 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10022021 [exp] 199 / 7e-65 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10014784 [exp] 193 / 3e-61 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10030378 [exp] 193 / 4e-61 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224100 [exp] 216 / 3e-70 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.008G166700 [exp] 215 / 8e-70 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.019G018200 [exp] 213 / 1e-69 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.002G038500 [exp] 212 / 1e-68 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G096600 [exp] 195 / 5e-61 AT1G16490 232 / 1e-74 myb domain protein 58 (.1) Potri.004G033100 [exp] 194 / 8e-61 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G067600 [exp] 194 / 8e-61 AT1G16490 229 / 2e-73 myb domain protein 58 (.1) Potri.002G157600 [exp] 193 / 8e-61 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.019G118200 [exp] 194 / 2e-60 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.005G164900 [exp] 192 / 2e-60 AT1G34670 309 / 7e-104 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10021871 pacid=23158008 polypeptide=Lus10021871 locus=Lus10021871.g ID=Lus10021871.BGIv1.0 annot-version=v1.0 ATGGGGAGAGCTCCATGTTGCGCGAAGATGGGGCTGAAGAGAGGCCCGTGGACTCCTGAAGAAGACCACATTCTCATCTCTTACATCCGCAATCACGGCC ACACCAACTGGCGCGCTCTCCCTAAACTCGCCCGACTTTTGAGGTGCGGCAAGAGCTGCCGTCTCCGCTGGATTAACTACCTCAATCCAGACATCAAGCG TGGCAACTTCACCGCCCATGAAGAGGACTCCATCATCCACCTCCACCAACTCCTCGGAAACAAGTGGTCGGCGATAGCGGCTAAATTGCCGGGGAGAACC GACAACGAGATTAAGAACGTGTGGCACACCCATCTCAAGAAGAGACTCAATCTGACGACGAAGAATAGTCCTGAAACGGAAACCCAGAGCTCTTCTCTCA CCGGAAACTCGCTCTCCTCGCCAGAGACCAGCAGTTGCGCGGAATTACCCTCGTCGTCTTTCTCTCATATCGACGAGAGCCTGTGGTCGGGGTCAGGGGA GTTGACCGGGGGGGAATATTGGCAATTTGACACTCAATTTAGTAGAGAGTCTGATTTAACGGAACTGGACGGCGTAGGAGAAACTAACGGCGTGGTTGAC GATTCCATGGTATTCTGGTACGATCTGTTGGTCCAAGCTGGAAGAAATGAATCGATTCTGACTGTTACGTAA
AA sequence Show only first row Show all	>Lus10021871 pacid=23158008 polypeptide=Lus10021871 locus=Lus10021871.g ID=Lus10021871.BGIv1.0 annot-version=v1.0 MGRAPCCAKMGLKRGPWTPEEDHILISYIRNHGHTNWRALPKLARLLRCGKSCRLRWINYLNPDIKRGNFTAHEEDSIIHLHQLLGNKWSAIAAKLPGRT DNEIKNVWHTHLKKRLNLTTKNSPETETQSSSLTGNSLSSPETSSCAELPSSSFSHIDESLWSGSGELTGGEYWQFDTQFSRESDLTELDGVGETNGVVD DSMVFWYDLLVQAGRNESILTVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021871 [exp]	0	1
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025784 [exp]	4.0	0.7391
AT2G34930			disease resistance family prot...		Lus10024737 [exp]	19.8	0.6795
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10028755 [exp]	19.9	0.6793
AT5G43470		HRT, RCY1, RPP8	RECOGNITION OF PERONOSPORA PAR...		Lus10025625 [exp]	22.8	0.6938
AT1G71140			MATE efflux family protein (.1...		Lus10028904 [exp]	33.6	0.6348
					Lus10026392 [exp]	36.3	0.6693
					Lus10039779 [exp]	36.8	0.6718
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10026343 [exp]	39.9	0.6378
AT2G16900			Arabidopsis phospholipase-like...		Lus10012164 [exp]	44.7	0.6843
AT5G57750			RING/U-box superfamily protein...		Lus10016541 [exp]	52.4	0.5672

Compare expression of checked genes

Lus10021871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.