Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26330 164 / 1e-51 Cupredoxin superfamily protein (.1) AT2G26720 119 / 8e-34 Cupredoxin superfamily protein (.1) AT2G31050 116 / 1e-32 Cupredoxin superfamily protein (.1) AT2G32300 96 / 2e-24 UCC1 uclacyanin 1 (.1) AT3G17675 90 / 2e-23 Cupredoxin superfamily protein (.1) AT3G27200 83 / 4e-20 Cupredoxin superfamily protein (.1) AT5G07475 82 / 2e-19 Cupredoxin superfamily protein (.1) AT4G31840 79 / 1e-18 AtENODL15 early nodulin-like protein 15 (.1) AT2G02850 78 / 1e-18 ARPN plantacyanin (.1) AT4G30590 79 / 2e-18 AtENODL12 early nodulin-like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041211 [exp] 269 / 7e-93 AT5G26330 167 / 6e-53 Cupredoxin superfamily protein (.1) Lus10010533 [exp] 219 / 3e-73 AT5G26330 174 / 1e-55 Cupredoxin superfamily protein (.1) Lus10002451 [exp] 187 / 2e-60 AT5G26330 136 / 2e-40 Cupredoxin superfamily protein (.1) Lus10006657 [exp] 101 / 1e-25 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10038098 [exp] 99 / 7e-25 AT1G45063 107 / 1e-27 copper ion binding;electron carriers (.1.2) Lus10041570 [exp] 92 / 1e-23 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10041848 [exp] 91 / 2e-23 AT2G02850 130 / 4e-40 plantacyanin (.1) Lus10002615 [exp] 89 / 2e-22 AT5G26330 96 / 9e-26 Cupredoxin superfamily protein (.1) Lus10041850 [exp] 88 / 2e-22 AT2G02850 121 / 1e-36 plantacyanin (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089900 [exp] 187 / 1e-60 AT5G26330 187 / 7e-61 Cupredoxin superfamily protein (.1) Potri.008G151000 [exp] 183 / 4e-59 AT5G26330 183 / 2e-59 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 132 / 2e-39 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 130 / 1e-38 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 130 / 2e-38 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.001G268700 [exp] 126 / 5e-37 AT5G26330 138 / 6e-42 Cupredoxin superfamily protein (.1) Potri.002G156401 [exp] 125 / 2e-36 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1) Potri.002G156100 [exp] 125 / 2e-36 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 118 / 2e-33 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.002G052500 [exp] 116 / 4e-33 AT5G26330 130 / 9e-39 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10021925 pacid=23158005 polypeptide=Lus10021925 locus=Lus10021925.g ID=Lus10021925.BGIv1.0 annot-version=v1.0 ATGGGTATGGCTGGCAGAGCTTCTGGCTTCGCACAGCTAGTGTCAATGGCGGTGCTGCTACAGTTGGTAATCCAATCCAATGGAGCTTTGCACAAGGTCG GAGACTCGGTGGGTTGGACTATAATCGGGAGTCCCGATTATAAACAGTGGGCGTCCACTAAGTCCTTCCAACTTGGCGACATTGTTCATTTCGAGTACAA CGCACAGTTCCACAACGTGATGAAGGTAACCCACGCCATGTACAGAGCCTGCAACGCATCAGCTCCGTTAGAAACATACACCACCGGAAACGATTCCATC ACCATAGCAACCCGCGGCCACCACTACTTCATCTGCGGCGTTGTCGGCCATTGCCAGTCCGGCCAGAAGGTCGACATCAACGTCCTCCGCATCGATCCTT CTTCTTCTTCTTCTTCCTTGTCGCCATCACCGGGAGGTGCTAGAGTGGCAGTCTCACCCACACTACCTTCCGCACAATCCCCTGCTCCTTCTGCAAATTC AGCTTCTTCCTTCATCACTCCCATGGCTCTTCTCCTCCTCGCCGCCGGCGCAATCCTCTCCCATCTCGGATTCGCTTAG
AA sequence Show only first row Show all	>Lus10021925 pacid=23158005 polypeptide=Lus10021925 locus=Lus10021925.g ID=Lus10021925.BGIv1.0 annot-version=v1.0 MGMAGRASGFAQLVSMAVLLQLVIQSNGALHKVGDSVGWTIIGSPDYKQWASTKSFQLGDIVHFEYNAQFHNVMKVTHAMYRACNASAPLETYTTGNDSI TIATRGHHYFICGVVGHCQSGQKVDINVLRIDPSSSSSSLSPSPGGARVAVSPTLPSAQSPAPSANSASSFITPMALLLLAAGAILSHLGFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26330			Cupredoxin superfamily protein...		Lus10021925 [exp]	0	1
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10000788 [exp]	1.4	0.9864
AT1G58070			unknown protein		Lus10015482 [exp]	2.8	0.9855
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	3.5	0.9853
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10041596 [exp]	4.9	0.9842
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10027782 [exp]	6.3	0.9841
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	6.9	0.9826
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030897 [exp]	7.1	0.9689
					Lus10004651 [exp]	8.1	0.9766
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030592 [exp]	8.5	0.9729
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	8.8	0.9826

Compare expression of checked genes

Lus10021925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.