Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05260 365 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G54870 362 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63380 96 / 1e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G13180 97 / 2e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G62610 97 / 4e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT3G03980 95 / 9e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G05530 93 / 6e-22 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT5G06060 92 / 1e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 92 / 2e-21 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 92 / 3e-21 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033745 [exp] 479 / 3e-172 AT1G54870 365 / 8e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029937 [exp] 387 / 5e-136 AT1G54870 503 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004471 [exp] 382 / 1e-133 AT1G54870 501 / 5e-180 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010874 [exp] 100 / 9e-25 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020265 [exp] 100 / 1e-24 AT3G03980 359 / 5e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001430 [exp] 99 / 3e-24 AT4G05530 369 / 2e-130 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10016354 [exp] 99 / 7e-24 AT1G52340 389 / 4e-137 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 98 / 8e-24 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024359 [exp] 98 / 9e-24 AT2G29360 314 / 2e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G023900 [exp] 394 / 8e-139 AT1G54870 493 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G149201 [exp] 385 / 1e-135 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G092400 [exp] 289 / 7e-99 AT1G54870 301 / 3e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G050700 [exp] 186 / 1e-58 AT1G54870 182 / 5e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G023900 [exp] 182 / 2e-56 AT1G54870 172 / 1e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G125900 [exp] 102 / 4e-25 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1) Potri.013G026000 [exp] 100 / 1e-24 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G024300 [exp] 99 / 3e-24 AT1G52340 408 / 6e-145 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 99 / 1e-23 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 97 / 4e-23 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10021931 pacid=23157959 polypeptide=Lus10021931 locus=Lus10021931.g ID=Lus10021931.BGIv1.0 annot-version=v1.0 ATGGCGTCCGGAAGCAGTAGTTGTGACTGTGGCTCAAAGTTCCCACCACAGCATCAACCAGAGCAGCCTGGCAAGGAATACTTGATGCACCCTTTGCCTC AGCCACTCAACCCTAACTACAAGCCATCTAATAAGCTCCTTGGGAAGGTGGCTCTGGTGACAGGAGGAGACTCGGGGATAGGTCGATCGGTGTGCCTGCA CTTCACAATGGAAGGAGCGACCGTAGGATTCACTTACGTCAAAGGAGTAGAAGATATCGACAAGAATGAAACGATCCGATGGATCAATAAACTTAAGCAA CCTAGTGCTAGAGGCCCAATAGCCATAGGTACTGCTGATATCGGATACGAATCGGAGTGCCAGAGGATTGTGGAAGAATTCGTGAACGAATACGGGACCA TCGACATCCTGGTCAACAATGCTGCGGTCCAGTACTACACTTTCTCGATCGAGGACGTAACGGAGGCGAGGCTGGAGAAGACTTTCAGGACCAACATATT TGCTTACTTCTTCATGGCGAAGTTTTCGCTGAGGCATATGAAAAGTGGGAGCTGCATAATCAACACCACCTCTGTCACTGCTTATGGTGGGCTGGGTGAG CTGCTGGATTATAGTTCGACCAAGGGAGCGATTGTGACGTTTACTAGGAGCTTGGCGTTGTTGCTTGTGGAGAGAGGGATCCGGGTGAACGGGGTTGCAC CGGGTCCGATTTGGACTCCTTTGCAAGTTGCTTCATTGCCTGCTGAGAGGGTGGCTAGCTTGGGATGTGAGGTGCCAATGGATAGAGCTGGACAGCCTTA TGAGGTTGCGCCTTCTTATGTGTTTTTGGCTTCTGCAGATTTCTCTTCTTATTTTACTGGCCAAGTCGTTCATCCCAATGGTGGATGGATTGTGAATGGT TGA
AA sequence Show only first row Show all	>Lus10021931 pacid=23157959 polypeptide=Lus10021931 locus=Lus10021931.g ID=Lus10021931.BGIv1.0 annot-version=v1.0 MASGSSSCDCGSKFPPQHQPEQPGKEYLMHPLPQPLNPNYKPSNKLLGKVALVTGGDSGIGRSVCLHFTMEGATVGFTYVKGVEDIDKNETIRWINKLKQ PSARGPIAIGTADIGYESECQRIVEEFVNEYGTIDILVNNAAVQYYTFSIEDVTEARLEKTFRTNIFAYFFMAKFSLRHMKSGSCIINTTSVTAYGGLGE LLDYSSTKGAIVTFTRSLALLLVERGIRVNGVAPGPIWTPLQVASLPAERVASLGCEVPMDRAGQPYEVAPSYVFLASADFSSYFTGQVVHPNGGWIVNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05260			NAD(P)-binding Rossmann-fold s...		Lus10021931 [exp]	0	1
					Lus10019938 [exp]	1.7	0.7300
					Lus10000178 [exp]	12.2	0.6284
AT2G26975			Ctr copper transporter family ...		Lus10017205 [exp]	14.8	0.6232
AT4G35620		CYCB2;2	Cyclin B2;2 (.1)		Lus10041092 [exp]	18.5	0.6011
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018098 [exp]	21.6	0.6124
AT1G80930			MIF4G domain-containing protei...		Lus10011226 [exp]	22.8	0.6106
					Lus10021684 [exp]	27.9	0.5926
					Lus10005511 [exp]	29.6	0.5746
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029332 [exp]	41.6	0.5855
AT1G61667			Protein of unknown function, D...		Lus10006749 [exp]	44.0	0.5381

Compare expression of checked genes

Lus10021931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.