Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23240 139 / 6e-41 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT1G06160 110 / 2e-29 AP2_ERF ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 (.1) AT2G31230 108 / 5e-29 AP2_ERF ATERF15 ethylene-responsive element binding factor 15 (.1) AT5G51190 83 / 2e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G43410 79 / 1e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G04370 79 / 2e-18 AP2_ERF ATERF14 Ethylene-responsive element binding factor 14 (.1) AT3G23220 78 / 2e-18 AP2_ERF ESE1 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) AT5G47230 82 / 3e-18 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT4G17490 80 / 7e-18 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT2G44840 79 / 1e-17 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042557 [exp] 261 / 4e-89 AT3G23240 155 / 7e-48 ethylene response factor 1 (.1) Lus10014655 [exp] 176 / 5e-55 AT3G23240 202 / 3e-65 ethylene response factor 1 (.1) Lus10006579 [exp] 170 / 7e-53 AT3G23240 211 / 4e-69 ethylene response factor 1 (.1) Lus10011829 [exp] 141 / 3e-41 AT3G23240 209 / 4e-68 ethylene response factor 1 (.1) Lus10021193 [exp] 139 / 8e-41 AT3G23240 209 / 2e-68 ethylene response factor 1 (.1) Lus10033885 [exp] 122 / 7e-34 AT3G23240 142 / 7e-42 ethylene response factor 1 (.1) Lus10003562 [exp] 121 / 1e-33 AT3G23240 146 / 1e-43 ethylene response factor 1 (.1) Lus10027469 [exp] 114 / 3e-31 AT3G23240 145 / 2e-43 ethylene response factor 1 (.1) Lus10022935 [exp] 109 / 2e-28 AT2G31230 145 / 4e-42 ethylene-responsive element binding factor 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G045200 [exp] 153 / 2e-46 AT3G23240 167 / 5e-52 ethylene response factor 1 (.1) Potri.019G014409 [exp] 138 / 1e-40 AT3G23240 161 / 1e-49 ethylene response factor 1 (.1) Potri.005G223200 [exp] 138 / 1e-40 AT3G23240 165 / 4e-51 ethylene response factor 1 (.1) Potri.010G072300 [exp] 136 / 8e-40 AT3G23240 201 / 2e-65 ethylene response factor 1 (.1) Potri.002G039100 [exp] 136 / 1e-39 AT3G23240 147 / 3e-44 ethylene response factor 1 (.1) Potri.008G166200 [exp] 133 / 1e-38 AT3G23240 202 / 1e-65 ethylene response factor 1 (.1) Potri.005G223300 [exp] 126 / 9e-36 AT3G23240 163 / 5e-50 ethylene response factor 1 (.1) Potri.002G039000 [exp] 117 / 4e-32 AT3G23240 138 / 2e-40 ethylene response factor 1 (.1) Potri.011G061700 [exp] 94 / 5e-24 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1) Potri.004G051700 [exp] 90 / 4e-22 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10022015 pacid=23160269 polypeptide=Lus10022015 locus=Lus10022015.g ID=Lus10022015.BGIv1.0 annot-version=v1.0 ATGGATAATCATCATTATCAAAATGATTGTTCTAATTACCTCCCTTTCAACGAGGACGATACTGAAGAAATGCTCCTCTTTCGACTCCTCATCAACCACC AATCCGACTCCGACTCCTCCGCCGCCGAAGAACCGTCCTCCTCCTCCTCCTCCTCTTCTGAGCATTTACAATGTTCCCCACAAGATTCGGAAGCTACGGC GGCGTACAGGGGAGTCAGGAAGAGGCCCTGGGGCAAGTACGCGGCCGAGATAAGGGACTCCACCAGGAACGGCGTCCGCGTCTGGCTGGGGACGTTCGAC ACCGCAGAGGCCGCCGCCTTGGCCTACGACCAGGCGGCGTTTGCGCTCCGTGGCTCGGCCGCGGTGCTAAATTTCTCGGCGGAGATAGCCAGGAGGTCTC TCCAGGACATTGGTTATAAAGGGGGGTGTTACTCTTCGCCGGTGCTGGAGCTGAAGAAGCGGAATTCGGCCATGAGGAAGGCGGTGAGAGGGCGGAGGAG TAAGAGGAAAGATAAGGCTGCGGCAGAGGTGGTGGAAGGGACGTCGACGGTGGTGTTTGATGATTTGGGGGCAGAGTATCTGGAGGAAATTATGGCGATT GCCGAGAATACTAGTATGATCAGTAGTACTAGTAATGCTGACGATGATCAGCATTGGTGGTGA
AA sequence Show only first row Show all	>Lus10022015 pacid=23160269 polypeptide=Lus10022015 locus=Lus10022015.g ID=Lus10022015.BGIv1.0 annot-version=v1.0 MDNHHYQNDCSNYLPFNEDDTEEMLLFRLLINHQSDSDSSAAEEPSSSSSSSSEHLQCSPQDSEATAAYRGVRKRPWGKYAAEIRDSTRNGVRVWLGTFD TAEAAALAYDQAAFALRGSAAVLNFSAEIARRSLQDIGYKGGCYSSPVLELKKRNSAMRKAVRGRRSKRKDKAAAEVVEGTSTVVFDDLGAEYLEEIMAI AENTSMISSTSNADDDQHWW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10022015 [exp]	0	1
AT5G19890			Peroxidase superfamily protein...		Lus10025535 [exp]	2.0	0.9126
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10011184 [exp]	4.2	0.8747
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019801 [exp]	5.7	0.8753
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031237 [exp]	7.0	0.8779
AT5G36160			Tyrosine transaminase family p...		Lus10033661 [exp]	7.2	0.9026
AT4G27450			Aluminium induced protein with...		Lus10034883 [exp]	10.0	0.8831
AT2G19500		ATCKX2, CKX2	cytokinin oxidase 2 (.1)		Lus10031200 [exp]	14.0	0.8706
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035289 [exp]	14.3	0.8790
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10030446 [exp]	17.2	0.8741
					Lus10038520 [exp]	24.7	0.8875

Compare expression of checked genes

Lus10022015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.