Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31180 214 / 2e-70 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT3G23250 209 / 6e-68 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT1G06180 203 / 4e-66 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT1G79180 194 / 8e-62 MYB ATMYB63 myb domain protein 63 (.1) AT3G61250 192 / 3e-61 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G28110 187 / 3e-59 MYB ATMYB41 myb domain protein 41 (.1) AT1G16490 186 / 7e-59 MYB ATMYB58 myb domain protein 58 (.1) AT4G21440 187 / 1e-58 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT3G02940 186 / 1e-58 MYB ATMYB107 myb domain protein 107 (.1) AT1G56160 183 / 9e-58 MYB ATMYB72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, myb domain protein 72 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042561 [exp] 327 / 9e-116 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10003557 [exp] 208 / 4e-67 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10041145 [exp] 204 / 1e-66 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10021185 [exp] 203 / 8e-66 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10033889 [exp] 204 / 1e-65 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10021871 [exp] 201 / 2e-65 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2) Lus10011820 [exp] 201 / 7e-65 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10041142 [exp] 189 / 2e-59 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 188 / 3e-59 AT5G10280 307 / 1e-103 myb domain protein 92 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G018200 [exp] 222 / 8e-74 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G224100 [exp] 213 / 9e-70 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.002G038500 [exp] 213 / 1e-69 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.008G166700 [exp] 211 / 7e-69 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.013G149200 [exp] 196 / 2e-63 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 193 / 5e-62 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.002G157600 [exp] 191 / 2e-60 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.005G074500 [exp] 190 / 7e-60 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.004G033100 [exp] 189 / 5e-59 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 188 / 9e-59 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10022021 pacid=23160240 polypeptide=Lus10022021 locus=Lus10022021.g ID=Lus10022021.BGIv1.0 annot-version=v1.0 ATGGTGAGAAATCCGTGTTGTGAGAGGATGGGAGTGAAGAAAGGGCCATGGACTCCTGAAGAAGATGAGATTCTCGTCTCCTACATCCGCCGCTTCGGCC ACAACAATTGGCGTGCACTCCCCAAACTAGCTGGTTTGTTGAGGTGTGGGAAGAGTTGTAGGTTGCGTTGGATTAATTATCTGCGACCAGACATTAAACG AGGAAATTTCACCCGTGAAGAAGAGGAAACCATTCTAAAGCTTCACCAAACGCTTGGTAACAGGTGGTCAGCAATGGCAGCAAGGTTGCCAGGACGGACA GATAACGAGATAAAGAATCATTGGCATTCTCGCTTGAAGAAAAGGTTTCAACACGATCGTCGTAGCTCCAGTTGCAACAACATGACAATCTTGACCTCGA CTGCTGCTTCTTCTTCTTCTTCTTCGTCATTGCAGGGATTGGTGGATGATCAGAAGAGCAGTAGTAGTACTGGAGATCGGAAAGAAAGTGCACAAGGGTT TGATGATAGTAGTTGTGCAAATGGTGATATGAAGTTCTGGTATGACTTGTTCATGAAAGCACAAGATTCCAAATTAAGTGCAGCCTTAGAAGGATGA
AA sequence Show only first row Show all	>Lus10022021 pacid=23160240 polypeptide=Lus10022021 locus=Lus10022021.g ID=Lus10022021.BGIv1.0 annot-version=v1.0 MVRNPCCERMGVKKGPWTPEEDEILVSYIRRFGHNNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEETILKLHQTLGNRWSAMAARLPGRT DNEIKNHWHSRLKKRFQHDRRSSSCNNMTILTSTAASSSSSSSLQGLVDDQKSSSSTGDRKESAQGFDDSSCANGDMKFWYDLFMKAQDSKLSAALEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	0	1
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	1.0	1.0000
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	1.4	1.0000
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	1.7	0.9979
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	2.0	0.9963
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	2.4	0.9695
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028003 [exp]	3.2	0.9197
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020333 [exp]	3.3	0.9134
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	3.9	0.9711
AT5G09360		LAC14	laccase 14 (.1)		Lus10026812 [exp]	4.6	0.9579
AT3G14470			NB-ARC domain-containing disea...		Lus10032781 [exp]	4.9	0.9417

Compare expression of checked genes

Lus10022021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.