Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13840 237 / 1e-75 GRAS GRAS family transcription factor (.1) AT3G49950 78 / 1e-16 GRAS GRAS family transcription factor (.1) AT5G17490 66 / 2e-12 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 65 / 4e-12 GRAS RGL2 RGA-like 2 (.1) AT5G66770 56 / 5e-09 GRAS GRAS family transcription factor (.1) AT4G17230 56 / 6e-09 GRAS SCL13 SCARECROW-like 13 (.1) AT1G14920 53 / 5e-08 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 52 / 2e-07 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT2G04890 49 / 2e-06 GRAS SCL21 SCARECROW-like 21 (.1) AT4G37650 48 / 2e-06 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000532 [exp] 367 / 7e-131 AT3G13840 235 / 3e-75 GRAS family transcription factor (.1) Lus10032882 [exp] 64 / 2e-11 AT1G55580 294 / 2e-95 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Lus10019281 [exp] 62 / 6e-11 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10018498 [exp] 62 / 6e-11 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1) Lus10039709 [exp] 62 / 6e-11 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1) Lus10033583 [exp] 61 / 2e-10 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10041740 [exp] 61 / 2e-10 AT5G66770 631 / 0.0 GRAS family transcription factor (.1) Lus10017626 [exp] 60 / 5e-10 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10027123 [exp] 59 / 7e-10 AT1G55580 298 / 5e-97 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168800 [exp] 343 / 2e-116 AT3G13840 481 / 6e-166 GRAS family transcription factor (.1) Potri.003G065400 [exp] 335 / 4e-113 AT3G13840 430 / 1e-145 GRAS family transcription factor (.1) Potri.005G145600 [exp] 70 / 1e-13 AT3G49950 521 / 0.0 GRAS family transcription factor (.1) Potri.007G053500 [exp] 66 / 3e-12 AT3G49950 524 / 0.0 GRAS family transcription factor (.1) Potri.017G019900 [exp] 62 / 5e-11 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G041500 [exp] 61 / 1e-10 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.007G063300 [exp] 60 / 3e-10 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G119000 [exp] 59 / 6e-10 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.005G186500 [exp] 59 / 7e-10 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.007G132000 [exp] 58 / 1e-09 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10022097 pacid=23146489 polypeptide=Lus10022097 locus=Lus10022097.g ID=Lus10022097.BGIv1.0 annot-version=v1.0 ATGGTAACGGCCGCCATTGAAGGAAGCAGCGATCAGAGCTGCTCGGAACCCCCATTCTCAATCGGTCCGCCGGGGGATAATTTCGCATCGAGGCTTCTCT GTTTTGCGAAATCCATGAATATAAACCTGCAGATCAATCGCCTCGACAATCGGCCCTTACAGAATCTGAACACCCAGGTAATCAACAAGGACAGGGAAGA AACTCTAGTTGTCTGCGCCCAATTCAGGCTACACCACCTGAATCACAACAACCCAGACGAGAGGAGCGAGTTTTTAAGGGTTCTGAGGAGTCTGGAGCCC AAGGGAGTAATCCTGAGCGAGAACAACATGGATTGCAGCTGCAACGGGTGCGTGGATTACTCGAGCGGGTTCACAAGGAGGGTGGAGTATCTGTGGAGGT TTCTGGATTCTACGAGCTCGGCGTTCAAAGGGAGGGAGAGCGAAGAGAGAAGGATGATGGAAGGGGAAGCAGCAAAGGCGTTGACAAACAGAGGGGAGAT GAACGAGAGGAAAGAGCAGTGGTGTGAGAGGATGAGAGGAGTTGGGTTTTCAGGGGAAGGGTTTTGCGAGGACGCCATTGATGAAGCTCGAGCTCTGTTG AGGAAGCATGATAACAATTGGGAAATGAGGGTTGAAGAGAAAGATGGGTTCGTTGGGTTGTGGTGGAAAAAACAGCCCGTTTCGTTTTGCTCCTTGTGGA AATTGCAAGCAGAATGA
AA sequence Show only first row Show all	>Lus10022097 pacid=23146489 polypeptide=Lus10022097 locus=Lus10022097.g ID=Lus10022097.BGIv1.0 annot-version=v1.0 MVTAAIEGSSDQSCSEPPFSIGPPGDNFASRLLCFAKSMNINLQINRLDNRPLQNLNTQVINKDREETLVVCAQFRLHHLNHNNPDERSEFLRVLRSLEP KGVILSENNMDCSCNGCVDYSSGFTRRVEYLWRFLDSTSSAFKGRESEERRMMEGEAAKALTNRGEMNERKEQWCERMRGVGFSGEGFCEDAIDEARALL RKHDNNWEMRVEEKDGFVGLWWKKQPVSFCSLWKLQAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13840	GRAS		GRAS family transcription fact...		Lus10022097 [exp]	0	1
					Lus10022098 [exp]	2.8	0.9107
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023433 [exp]	10.8	0.8575
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037601 [exp]	11.1	0.8698
AT1G11340			S-locus lectin protein kinase ...		Lus10025512 [exp]	20.7	0.8605
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10040336 [exp]	24.3	0.7883
AT1G24130			Transducin/WD40 repeat-like su...		Lus10029206 [exp]	26.0	0.8583
AT3G01690			alpha/beta-Hydrolases superfam...		Lus10014890 [exp]	40.7	0.8272
AT1G44542			Cyclase family protein (.1)		Lus10014091 [exp]	46.6	0.8526
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	51.2	0.8410
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10041581 [exp]	53.4	0.8350

Compare expression of checked genes

Lus10022097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.