Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32730 569 / 0 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT5G11510 385 / 1e-119 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT5G02320 290 / 9e-87 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT3G09370 287 / 3e-86 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT4G00540 233 / 6e-68 MYB MYB3R-2, PC-MYB2, ATMYB3R2 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, myb domain protein 3r2 (.1.2) AT4G18770 153 / 1e-39 MYB ATMYB98 myb domain protein 98 (.1) AT3G27785 145 / 5e-37 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT3G09230 139 / 4e-35 MYB ATMYB1 myb domain protein 1 (.1) AT4G37260 137 / 4e-35 MYB ATMYB73 myb domain protein 73 (.1) AT5G58850 139 / 5e-35 MYB ATMYB119 myb domain protein 119 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011687 [exp] 1677 / 0 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10038623 [exp] 517 / 4e-169 AT4G32730 376 / 3e-118 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10037898 [exp] 456 / 1e-145 AT4G32730 266 / 4e-77 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10025351 [exp] 285 / 2e-85 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10024394 [exp] 285 / 2e-85 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10008010 [exp] 226 / 6e-65 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10042111 [exp] 150 / 9e-39 AT4G18770 249 / 8e-79 myb domain protein 98 (.1) Lus10002384 [exp] 149 / 2e-38 AT4G18770 250 / 7e-79 myb domain protein 98 (.1) Lus10027695 [exp] 150 / 8e-38 AT4G18770 276 / 1e-87 myb domain protein 98 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G241700 [exp] 1029 / 0 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 1004 / 0 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.006G085600 [exp] 288 / 4e-86 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.014G079300 [exp] 263 / 3e-77 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.003G123800 [exp] 239 / 3e-69 AT3G09370 231 / 3e-70 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Potri.015G077700 [exp] 147 / 9e-38 AT4G18770 300 / 4e-98 myb domain protein 98 (.1) Potri.012G082000 [exp] 146 / 3e-37 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.005G118500 [exp] 146 / 3e-37 AT4G18770 234 / 2e-72 myb domain protein 98 (.1) Potri.001G347200 [exp] 146 / 4e-37 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.009G044100 [exp] 146 / 5e-37 AT5G58850 224 / 5e-68 myb domain protein 119 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10022136 pacid=23146454 polypeptide=Lus10022136 locus=Lus10022136.g ID=Lus10022136.BGIv1.0 annot-version=v1.0 ATGAGGTCGACGACGGCTCTAGGGAGATTCGAGGATGAAGATCGGTGGACGCGGCAATCGATGGAAGCGGTGGCTCTGCTCACTTCAGAGGGGAGGATCA AGCGGAGAACGAGCGGCCCTACTCGGCGTTCAACAAAGGGGCAATGGACAGCTGAAGAGGATGAGATTTTACGCCAAGCTGTCCATCGTTTCAAGGGGAA AAATTGGAAAAAAATTGCTGAATGCTTCAAGGACCGAACTGATGTACAATGCCTGCATCGATGGCAGAAAGTCTTAAATCCTGAGCTTGTAAAAGGGCCA TGGTCCAAGGAGGAAGATGAAATTATAGTTGAAATGGTCCATAAGTATGGACCAAAGAAGTGGTCGACAATTGCTCAACATCTACCAGGGCGCATTGGAA AGCAGTGTAGAGAAAGGTGGCATAATCATCTTAATCCATCGATAAACAAAGAAGCGTGGACTCAGGATGAAGAAGTTGCCTTGGTTCGTGCCCATCAGAT GTATGGAAACAGATGGGCAGAGCTCACAAAATTCTTGCCTGGAAGGACAGATAATGCAATAAAGAACCACTGGAACAGTTCTGTGAAGAAGAAGCTGGAT TCTTACTTGGCATCAGGTCTATTAGAACAGTTTCAAGGCCTTCCTCTAGTTGTACATCAAAATCAACCGACGCCTTCATCTTCTTCAAGGTTGCAAAATA GTGGAGATGATAATGATAGTGGACGAATGTGTGGAACAGTGGCAGAGGAAATAACGGAATGGAGGAAGGAGGAAACTGTCAGGGCTTGTTCTCAATCAGC TAATGATTTGGGTAATTCAATTATCCGTTCTGGAGAAGAATTCCAATTAACACAAGATTCTGGTCATGGAGAGAATCAAAACCACCATGCTGGAAATTGC TCGGTGCAATATTACACATCACGTGCAATTGTCCCCTTTTCCATCCCAGAAGCACCCTTTGAAGCAGATTGCTCGTCAAACTTTCTCCAGCAGAATTATC CTCATATTGCAGTTAATTCAGCAAGGGCTGATTACCACATCAGCATTGTGGAACAAGGGTTTTCAGGTGTGCCAAGTCATGGTATAGCTGCTCATGAAAG CCAAGAAACAGCCAACGTTCCATCTCATGCTTCAATGAGCTTCCAAGGTCCTGTTCCCATGGAAGATATGGCGGCAAGTTCTACCACGCGTGAACAAATT CTTATATCTGATGATGAATGTTGCAAGATCTTGTTCTTGGAGACTCAAACTGTTGGTGGAAACATCCCTCAAAATCGCATGGAAGACTCGCATATGGTTG ACCTTGATGGAAGCAATCATTCCCTTCCTTATCCATCATCAAATAACCATATTAATCCTCCAAGATGTGGTATATTGGAAACACAGTGCAGCCAGTCATT CCCTCATAATTTGGTTACTCCATCAAATGATGAGAATCATATATGCTCTCAGAAACAGAGCCAGTTCGTCACTTCATTTGGAGCTCATGATCAAGACTTT ATAGCAAGTGTTAATGATATCGTCTTCATCTCTGATGACAACAATGTTGCAAATTCCTTTCGTGCTAATGGTGAGAATAACTCAGAGATGCAAGAGGAAT CATATTTGAAAGAAGCTTCAAGATTGGTTGCAGGTGACTCAGCTACTTTGCCTTGTCCTACTGGTGTGAACCAAAAGATGGATGTGGATCAGCAAAATAC AGGATCTTTATGTTACGAGCCTCCTCGGTTCCCAGGCTTGGATCTTCCTTTCTTCAGTTGTGATCTTGTACAGTCAGACAGTGATCTTCAGCAAGAGTAT AGTCCTCTTGGTATCCGACAGTTTATGGTGTCTTCAGTGAACTGTATCAGTCCATTTAGGTTGTGGGATTCACCAACTCGTAGCTCCAGTCCTGATGCGG TTCTCAAGAGTGCTGCTAAGAGTTTCATGGGCACGCCATCCATTTTAAAGAAAAGGACTCGGGATTTATTATCACCTTTGTCAGAAAGAAGAAAAGACAA AAAGCTTGAGGTTGACATGACTTCTAGTTTAACAAAAGAGTTCCAACGCCTGGATGTTATGTTTGAGGAGGCCGAGTCTCGTAAGCCACATGCGATGTCT CCATTGTCTAGTCAGGAAATTAATGAAGTGTCTTGTAGTGAAGATAAAGAAAATGTGGATCCTGCTCTTATACATGGAAGAGATGGAGACATAGTATCAG TAGACGGAAAAGAAAAGCCGAGAGATGTTTCTACTATCTCAGAGGATGATGTTGATAGAAATAACACCCAGGAGAACGCAAAGAAAGAAATAAATTGTAT TGGTCCTAAAACTAAAGATCATTCCGGTGTTGATCCACAAATTCCTTCTGAAGTACTTGGTGAAGACAGCTTGAATGATCTGTTATTATTTTCTCCTGAT GCTCAAACTCCAAGGAACTGGCATCGGAGAATCTTAGCTACACTATCTGAAAAGGTTGTTAATTCGGTATCCTCATCTGGAAATCGAAGCACAGGCTCAC CGGCGGTTTACAAGATGAATGATGGTCATATAGTTGCTGCTACAGAAACGAAAGCTAATGAGAACACAGTTGCTAGCACTGGGAATGATGGCGTAATTGG GAATCTTAACATCTTTGGTGGAACTCCTTTCAAGAGAAGCATCGAGTCACCTTCGGGATGGAAATCTCCGTGGTTCATTAACTCCTTCATCCCTGGTCCA AGGGTTGACACAGATATTTCAGTTGAGGATATTGGGTACTTTCTAAGCCCTGGGGACAGAAGCTACGATGCCATTACTCTTTTGAAGCAGTTCAGTGAGC ATACGGCTGCTGCATGTGCTGATGCCTTGGAAGTTCTAGGGGATGAAACCCCCGGCACCATATCAAAAGCAAGACACCCGAAGAATCCGAATTCGGAGGA GGAGCGTGATAATGTTTCCCATTTGGCCAATATTGCGACTGAATGTCGAGTTCTGGATTTCAGCGAATGTGGGACGCCTGAGAAAGGTAAGGAGAATGCG AAATCTTCTCCGGTTGCAATTAGCATGTCGAGTCCTTCGTGCATGTTGAAGAGCTTTAGATAG
AA sequence Show only first row Show all	>Lus10022136 pacid=23146454 polypeptide=Lus10022136 locus=Lus10022136.g ID=Lus10022136.BGIv1.0 annot-version=v1.0 MRSTTALGRFEDEDRWTRQSMEAVALLTSEGRIKRRTSGPTRRSTKGQWTAEEDEILRQAVHRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGP WSKEEDEIIVEMVHKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQDEEVALVRAHQMYGNRWAELTKFLPGRTDNAIKNHWNSSVKKKLD SYLASGLLEQFQGLPLVVHQNQPTPSSSSRLQNSGDDNDSGRMCGTVAEEITEWRKEETVRACSQSANDLGNSIIRSGEEFQLTQDSGHGENQNHHAGNC SVQYYTSRAIVPFSIPEAPFEADCSSNFLQQNYPHIAVNSARADYHISIVEQGFSGVPSHGIAAHESQETANVPSHASMSFQGPVPMEDMAASSTTREQI LISDDECCKILFLETQTVGGNIPQNRMEDSHMVDLDGSNHSLPYPSSNNHINPPRCGILETQCSQSFPHNLVTPSNDENHICSQKQSQFVTSFGAHDQDF IASVNDIVFISDDNNVANSFRANGENNSEMQEESYLKEASRLVAGDSATLPCPTGVNQKMDVDQQNTGSLCYEPPRFPGLDLPFFSCDLVQSDSDLQQEY SPLGIRQFMVSSVNCISPFRLWDSPTRSSSPDAVLKSAAKSFMGTPSILKKRTRDLLSPLSERRKDKKLEVDMTSSLTKEFQRLDVMFEEAESRKPHAMS PLSSQEINEVSCSEDKENVDPALIHGRDGDIVSVDGKEKPRDVSTISEDDVDRNNTQENAKKEINCIGPKTKDHSGVDPQIPSEVLGEDSLNDLLLFSPD AQTPRNWHRRILATLSEKVVNSVSSSGNRSTGSPAVYKMNDGHIVAATETKANENTVASTGNDGVIGNLNIFGGTPFKRSIESPSGWKSPWFINSFIPGP RVDTDISVEDIGYFLSPGDRSYDAITLLKQFSEHTAAACADALEVLGDETPGTISKARHPKNPNSEEERDNVSHLANIATECRVLDFSECGTPEKGKENA KSSPVAISMSSPSCMLKSFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10022136 [exp]	0	1
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10009494 [exp]	1.4	0.9473
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10011687 [exp]	2.2	0.9482
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10011693 [exp]	5.1	0.9094
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Lus10002033 [exp]	7.3	0.9413
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10029646 [exp]	8.7	0.9230
AT5G55830			Concanavalin A-like lectin pro...		Lus10016620 [exp]	13.1	0.9324
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10004959 [exp]	13.9	0.9183
AT4G39860			unknown protein		Lus10041695 [exp]	15.1	0.8656
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009052 [exp]	15.3	0.9225
AT3G54750			unknown protein		Lus10016201 [exp]	15.6	0.9155

Compare expression of checked genes

Lus10022136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.