Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24220 204 / 4e-64 ATPUP5 purine permease 5 (.1.2) AT1G44750 96 / 1e-22 ATPUP11 purine permease 11 (.1.2.3) AT1G28220 92 / 3e-21 ATPUP3 purine permease 3 (.1) AT2G33750 92 / 3e-21 ATPUP2 purine permease 2 (.1.2) AT4G18210 88 / 6e-20 ATPUP10 purine permease 10 (.1) AT4G18220 86 / 3e-19 Drug/metabolite transporter superfamily protein (.1) AT1G28230 79 / 1e-16 ATPUP1, PUP1 purine permease 1 (.1) AT4G08700 74 / 5e-15 ATPUP13 Drug/metabolite transporter superfamily protein (.1) AT4G18197 73 / 2e-14 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT5G41160 72 / 2e-14 ATPUP12 ARABIDOPSIS THALIANA PURINE PERMEASE 12, purine permease 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036272 [exp] 306 / 9e-104 AT2G24220 417 / 4e-146 purine permease 5 (.1.2) Lus10041133 [exp] 105 / 2e-26 AT1G28220 392 / 1e-136 purine permease 3 (.1) Lus10020950 [exp] 104 / 1e-25 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10015906 [exp] 103 / 1e-25 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10036465 [exp] 103 / 2e-25 AT1G28220 394 / 1e-136 purine permease 3 (.1) Lus10008713 [exp] 99 / 1e-23 AT1G28220 288 / 2e-95 purine permease 3 (.1) Lus10010757 [exp] 93 / 1e-21 AT1G28220 350 / 8e-120 purine permease 3 (.1) Lus10020939 [exp] 93 / 2e-21 AT1G28220 286 / 9e-95 purine permease 3 (.1) Lus10008212 [exp] 92 / 3e-21 AT1G28220 293 / 7e-97 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G184900 [exp] 232 / 7e-75 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.005G160300 [exp] 99 / 8e-24 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.001G147600 [exp] 90 / 1e-20 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.014G043900 [exp] 90 / 2e-20 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.002G099600 [exp] 79 / 1e-16 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.001G352100 [exp] 73 / 2e-14 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G352200 [exp] 72 / 3e-14 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.003G156900 [exp] 71 / 6e-14 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 69 / 2e-13 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10022148 pacid=23156305 polypeptide=Lus10022148 locus=Lus10022148.g ID=Lus10022148.BGIv1.0 annot-version=v1.0 ATGGAAGATGGATCATCATCACCAAAGCCTACTAGGATTACTTGGAGAGACAAACTTTCCCAATTCCAGGCCGAGTTATGGGTATCATTCCATAACAAAC CAATCTCACACTGGATTCTTCTAGCTTTCAGCAGTATAGCAATGCTTGTTGCTTTCCCTGCTTCAAGTCTCTTATCTCGTGTCTACTACTCCAATGGAGG CACTAGCAAGTGGATCATCTCATGGGTAGCAGTTGCCGGATGGCCCTCATCGGTCATGATCCTTGTTCCAACTTATTACTCTCTGAATGCTTCGATGATA AATGCCATCGTGCTAATCACCACTGCAATGACGATAATAGCCCTGGATTCTAGCTCAGACAGGCACGGAGACGTCAGTTACATCTTGGGAAGGAGATCAT TCCACGTCGTGCTAGAGCAGCAGGTGATGGTGTCTTTCTTTGGCTTCTTGATCACTCTAGTTGGTGTCGTCTTGAATCAGGATTTCCAAAGGATGAAATC TGAAGCTACGAGTTTCAAAGGTGGTGAGTCTGCGTACGTACTGGTTCTGGTGTTTGGAGCGATTACTTTTCAGCTGGGGATATTGGGAGCCACGGGTGTG CTGTTCCTGTCGAACACGGTGCTTGCTGGTGTACTGAATGCGATTCGGGTGCCATTGACGAGCATTGCTGCTGTTATATTGCTGCATGATCCGATGAGCG GGTTCAAGATTCTGTCTTTGGTGATAACATTTTGGGGGTTCTGTTCTTACATCTATGGAAGTCTCTCCTTCTCTCCCCAAAAAAAAGAAGAAGCTATAGT ATGA
AA sequence Show only first row Show all	>Lus10022148 pacid=23156305 polypeptide=Lus10022148 locus=Lus10022148.g ID=Lus10022148.BGIv1.0 annot-version=v1.0 MEDGSSSPKPTRITWRDKLSQFQAELWVSFHNKPISHWILLAFSSIAMLVAFPASSLLSRVYYSNGGTSKWIISWVAVAGWPSSVMILVPTYYSLNASMI NAIVLITTAMTIIALDSSSDRHGDVSYILGRRSFHVVLEQQVMVSFFGFLITLVGVVLNQDFQRMKSEATSFKGGESAYVLVLVFGAITFQLGILGATGV LFLSNTVLAGVLNAIRVPLTSIAAVILLHDPMSGFKILSLVITFWGFCSYIYGSLSFSPQKKEEAIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10022148 [exp]	0	1
AT5G39785			Protein of unknown function (D...		Lus10015368 [exp]	1.4	0.8565
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013606 [exp]	5.7	0.8463
AT1G67850			Protein of unknown function (D...		Lus10011414 [exp]	6.2	0.8226
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10040415 [exp]	8.1	0.8551
AT3G57810			Cysteine proteinases superfami...		Lus10037002 [exp]	9.5	0.8416
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	11.8	0.8411
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10021152 [exp]	12.0	0.8241
AT1G02630			Nucleoside transporter family ...		Lus10002167 [exp]	12.8	0.8452
AT3G12350			F-box family protein (.1.2)		Lus10010607 [exp]	14.8	0.7970
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10042750 [exp]	15.3	0.8492

Compare expression of checked genes

Lus10022148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.