Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31840 73 / 8e-17 AtENODL15 early nodulin-like protein 15 (.1) AT5G25090 72 / 1e-16 AtENODL13 early nodulin-like protein 13 (.1) AT2G25060 70 / 7e-16 AtENODL14 early nodulin-like protein 14 (.1) AT3G20570 64 / 4e-13 AtENODL9 early nodulin-like protein 9 (.1) AT4G30590 62 / 8e-13 AtENODL12 early nodulin-like protein 12 (.1) AT2G23990 63 / 9e-13 AtENODL11 early nodulin-like protein 11 (.1.2) AT5G57920 54 / 1e-09 AtENODL10 early nodulin-like protein 10 (.1) AT4G32490 51 / 2e-08 AtENODL4 early nodulin-like protein 4 (.1) AT4G28365 50 / 2e-08 AtENODL3 early nodulin-like protein 3 (.1) AT5G14345 46 / 6e-07 AtENODL21 early nodulin-like protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036257 [exp] 167 / 4e-54 AT2G25060 110 / 3e-31 early nodulin-like protein 14 (.1) Lus10019955 [exp] 95 / 2e-25 AT4G30590 120 / 1e-34 early nodulin-like protein 12 (.1) Lus10026880 [exp] 65 / 1e-13 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10003432 [exp] 65 / 1e-13 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10011158 [exp] 54 / 1e-09 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10043063 [exp] 54 / 2e-09 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10032111 [exp] 47 / 4e-07 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10018617 [exp] 45 / 3e-06 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10019405 [exp] 45 / 3e-06 AT1G45063 107 / 3e-27 copper ion binding;electron carriers (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G264600 [exp] 68 / 5e-15 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.006G184100 [exp] 67 / 8e-15 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.018G018200 [exp] 65 / 7e-14 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.011G135400 [exp] 46 / 9e-07 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.006G067300 [exp] 46 / 1e-06 AT5G20230 97 / 2e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.017G011200 [exp] 45 / 4e-06 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.011G117800 [exp] 44 / 8e-06 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.001G419200 [exp] 42 / 5e-05 AT3G20570 153 / 1e-46 early nodulin-like protein 9 (.1) Potri.001G398800 [exp] 41 / 7e-05 AT4G28365 145 / 9e-42 early nodulin-like protein 3 (.1) Potri.003G150300 [exp] 41 / 7e-05 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10022160 pacid=23156282 polypeptide=Lus10022160 locus=Lus10022160.g ID=Lus10022160.BGIv1.0 annot-version=v1.0 ATGGCACGTTTGATTTTCTTTGTATCTCTCATTTCCTTGTTGCTGGCAGCTTCTGAATCTGAAGTAAGAGAGATCATCGTCGGAGGCAAAGAGAGCAACA CTTTTTGGAGGGTTCCTAATGGCGATCGATCCAATCTTAATTACTGGGCACAGCAAATCAGATTCTCAAAAGGAGATGTTCTCGTATTGAAAACCGTGGC GAAAAAGGATACAGTGCTGGAAGTGAACAAGGAAGCGTACGACAGCTGCAACACGACGTCGGATTCCATAAAAAAGGTGGACGGTGACCATCTCCGGGAA TTACCTCTGGTTCCGGCGCCGGCGCCAAGTGGATCGTACAAGGTTAGAGATTTGGGATCGGTGGCCACGGGGGCAGCGTTCGTGTCTTTGTTGCTTCTAT GA
AA sequence Show only first row Show all	>Lus10022160 pacid=23156282 polypeptide=Lus10022160 locus=Lus10022160.g ID=Lus10022160.BGIv1.0 annot-version=v1.0 MARLIFFVSLISLLLAASESEVREIIVGGKESNTFWRVPNGDRSNLNYWAQQIRFSKGDVLVLKTVAKKDTVLEVNKEAYDSCNTTSDSIKKVDGDHLRE LPLVPAPAPSGSYKVRDLGSVATGAAFVSLLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25060		AtENODL14	early nodulin-like protein 14 ...		Lus10022160 [exp]	0	1

Compare expression of checked genes

Lus10022160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.