Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01550 262 / 7e-86 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT5G33320 252 / 1e-81 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT5G17630 146 / 7e-41 Nucleotide/sugar transporter family protein (.1) AT1G61800 125 / 2e-33 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT5G54800 122 / 5e-32 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT5G46110 117 / 4e-31 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT4G03950 83 / 2e-18 Nucleotide/sugar transporter family protein (.1) AT1G77610 53 / 6e-08 EamA-like transporter family protein (.1) AT1G21870 52 / 1e-07 GONST5 golgi nucleotide sugar transporter 5 (.1) AT3G11320 52 / 2e-07 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013083 [exp] 395 / 4e-138 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Lus10042110 [exp] 267 / 2e-87 AT5G33320 528 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Lus10002385 [exp] 263 / 9e-86 AT5G33320 485 / 2e-171 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Lus10007653 [exp] 130 / 7e-35 AT1G61800 559 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10018356 [exp] 129 / 8e-35 AT1G61800 557 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10011155 [exp] 129 / 1e-34 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10043060 [exp] 129 / 2e-34 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10037085 [exp] 122 / 5e-32 AT5G46110 530 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10015399 [exp] 122 / 1e-31 AT5G46110 642 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347300 [exp] 314 / 6e-106 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Potri.015G077900 [exp] 266 / 3e-87 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.012G082100 [exp] 260 / 1e-84 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.013G071900 [exp] 138 / 1e-37 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.001G420200 [exp] 128 / 3e-34 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.004G019900 [exp] 126 / 2e-33 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.011G135900 [exp] 124 / 1e-32 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.011G057800 [exp] 123 / 4e-32 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.008G095200 [exp] 121 / 1e-31 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.004G048900 [exp] 118 / 3e-31 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10022257 pacid=23139441 polypeptide=Lus10022257 locus=Lus10022257.g ID=Lus10022257.BGIv1.0 annot-version=v1.0 ATGTTTGGAGTTTGGTACCTTCTCAACAGCTGCTTCAACATTTACAACAAGCAGGTTCTGGAGGTGTATCCATTTCCAGTAACAGTAACTGCCTTCCAAT TTGGATGTGGGTCTTTGGTGGTTGTTACTATGTGGGCACTAAAACTCCATCCCATACCTAAACTCACCTCTTCTCAGCTTGCAGCAATAATCCCACTGGC TCTGGCACACTCAATGGGAAATCTTCTGACCAACGTTAGTATTGGGAAAGTTTCTGTTTCATTCACCCACACTGTCAAAGCCATGGAACCCTTTTTCACA GTCATCTTCGCTGCCCTTTTCCTTGGCGAGCACAAGAATTATGATATGGTGGTGGGAAACAGGTCTGGTTTTTGCAGTGCCATGGCTTCGAATGTGACCA ACCAATCGAGGAACGTACTGAGCAAAAAGCTAATGGTTAAGGAAGAAGAAACCCTGGACAACATCAATATTTTCTCTGTTATAACCATCATCTCATTTCT TGTGCTACTTCCGTCTGCAATCTCGATCGAAGGGATCAAGTTCACACCTTCATATTTCAAGGCTGCAGCTAGTGAAGGTTTGAATGTAAGACAGCTATGC TTCAGATCTCTCATTGCTGGCTTCTGTCTCCATATGTACCAACAAGTGAGCAAATTTCTGTCCTATCTCCAAATGGGTTTTTCACAGTATAGAATGTTCA AGGCAAAATCCGGGTTTGAGTTACTGAAAGTTGGAGAAAAAACAGGTATCATACATGATACTGGGAATGGTGAATCCAGTGAGTCATGCAGTAGGGAACT GCGTGAAGAGGGTGGTGGTGATTGTGTCATCCATTATCTTCTTCAACACCCCGGTCTCTCCAATCAACTCTCTTGGTAA
AA sequence Show only first row Show all	>Lus10022257 pacid=23139441 polypeptide=Lus10022257 locus=Lus10022257.g ID=Lus10022257.BGIv1.0 annot-version=v1.0 MFGVWYLLNSCFNIYNKQVLEVYPFPVTVTAFQFGCGSLVVVTMWALKLHPIPKLTSSQLAAIIPLALAHSMGNLLTNVSIGKVSVSFTHTVKAMEPFFT VIFAALFLGEHKNYDMVVGNRSGFCSAMASNVTNQSRNVLSKKLMVKEEETLDNINIFSVITIISFLVLLPSAISIEGIKFTPSYFKAAASEGLNVRQLC FRSLIAGFCLHMYQQVSKFLSYLQMGFSQYRMFKAKSGFELLKVGEKTGIIHDTGNGESSESCSRELREEGGGDCVIHYLLQHPGLSNQLSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	0	1
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10007634 [exp]	2.6	0.8778
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020484 [exp]	2.6	0.9059
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10004360 [exp]	4.9	0.8803
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10024330 [exp]	6.2	0.8997
AT5G08050			Protein of unknown function (D...		Lus10040515 [exp]	6.2	0.8970
AT3G13220		MSR02, AtABCG26...	ATP-binding cassette G26, ABC-...		Lus10016649 [exp]	8.1	0.8612
AT2G20830			transferases;folic acid bindin...		Lus10039789 [exp]	9.9	0.8402
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	10.8	0.8427
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10028909 [exp]	12.4	0.8825
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10033642 [exp]	13.9	0.8495

Compare expression of checked genes

Lus10022257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.