Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27810 239 / 9e-80 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT5G40350 232 / 3e-77 MYB ATMYB24 myb domain protein 24 (.1) AT3G01530 214 / 3e-70 MYB ATMYB57 myb domain protein 57 (.1) AT1G68320 195 / 7e-62 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT1G25340 194 / 3e-61 MYB ATMYB116 myb domain protein 116 (.1.2) AT1G48000 189 / 6e-60 MYB ATMYB112 myb domain protein 112 (.1) AT5G49620 187 / 1e-58 MYB ATMYB78 myb domain protein 78 (.1.2) AT2G47190 185 / 5e-58 MYB AtMYB2 myb domain protein 2 (.1) AT3G06490 183 / 1e-56 MYB BOS1, AtMYB108 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) AT3G24310 170 / 5e-52 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013081 [exp] 320 / 5e-108 AT3G27810 186 / 4e-56 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10014557 [exp] 237 / 3e-79 AT5G40350 224 / 1e-74 myb domain protein 24 (.1) Lus10032129 [exp] 236 / 1e-78 AT5G40350 221 / 2e-73 myb domain protein 24 (.1) Lus10037818 [exp] 203 / 2e-64 AT3G06490 273 / 4e-90 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10017096 [exp] 201 / 2e-64 AT3G06490 259 / 4e-86 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10041435 [exp] 198 / 4e-62 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10034338 [exp] 197 / 8e-62 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10038062 [exp] 186 / 2e-58 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10009996 [exp] 184 / 1e-57 AT2G47190 221 / 3e-71 myb domain protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G346600 [exp] 238 / 8e-80 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.017G071500 [exp] 226 / 3e-75 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.008G101400 [exp] 205 / 4e-65 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.010G149900 [exp] 203 / 2e-64 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.012G055600 [exp] 200 / 3e-63 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.015G046200 [exp] 198 / 2e-62 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.008G122100 [exp] 196 / 6e-62 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.010G123000 [exp] 191 / 1e-59 AT1G68320 268 / 4e-89 myb domain protein 62 (.1) Potri.014G117000 [exp] 174 / 2e-53 AT5G49620 233 / 1e-75 myb domain protein 78 (.1.2) Potri.002G191800 [exp] 171 / 2e-52 AT5G49620 231 / 1e-74 myb domain protein 78 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10022259 pacid=23139416 polypeptide=Lus10022259 locus=Lus10022259.g ID=Lus10022259.BGIv1.0 annot-version=v1.0 ATGGAGAAGAAGGGAATTAGTAATACGCAAATAGAAGCGGAGGTGAGGAAAGGACCATGGACAATGGAGGAAGACTTGATCTTGATCAACTACATAGCCA ACCATGGCGAAGGTGTTTGGAACTCCCTTGCCAAAGCCGCTGGGCTGAAGAGAACGGGGAAGAGTTGCAGGCTGAGGTGGTTGAACTACTTGCGTCCAGA CGTCCGGCGAGGCAACATTACTCCTGAGGAACAGCTCCTCATCATGGACCTTCATTCCAAATGGGGTAACAGGTGGTCCAAGATAGCAAAGCATCTGCCT GGAAGGACTGACAACGAGATAAAGAACTACTGGCGAACGAGGATCCAAAAGCACCTCAAGCAAGCCGATCACCACCATCAACAGCAGCAAAGGTTCCCCT CATCAGGCCACCCGGGTATCGGGTTGGACCAGATGATGACCATGGGTCGCGAGACATCTGCTAGCAACAACAACACCAGTCATGTCTCTGCCGACACAAT GGAGATGGATTACTCCCCTCCTGCATCTCACCATCATTACAACAACAACCACCACCACCACTTTGATGTAGGTTTCCCTGGAGCTTCGGCCGCGCCCACC AGCAAAATGGCGACTTCCGGGTCTTCGAGTAACATGCAGCCGCCGCCTCCTCCTCTTGAGTCTGCGGAAGGTTACAGCTGGAGCATGGAGGAGCTCTGGT CTATGCAGCTCCTGAATGGAGATCAATAA
AA sequence Show only first row Show all	>Lus10022259 pacid=23139416 polypeptide=Lus10022259 locus=Lus10022259.g ID=Lus10022259.BGIv1.0 annot-version=v1.0 MEKKGISNTQIEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMDLHSKWGNRWSKIAKHLP GRTDNEIKNYWRTRIQKHLKQADHHHQQQQRFPSSGHPGIGLDQMMTMGRETSASNNNTSHVSADTMEMDYSPPASHHHYNNNHHHHFDVGFPGASAAPT SKMATSGSSSNMQPPPPPLESAEGYSWSMEELWSMQLLNGDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Lus10022259 [exp]	0	1
					Lus10013380 [exp]	3.3	0.9016
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10017118 [exp]	4.4	0.8860
					Lus10006897 [exp]	5.0	0.8776
AT3G14880			unknown protein		Lus10039196 [exp]	5.7	0.9285
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10027821 [exp]	9.5	0.8672
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	9.6	0.9021
					Lus10040397 [exp]	11.7	0.9021
					Lus10006918 [exp]	13.6	0.9021
					Lus10007508 [exp]	15.2	0.9021
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009516 [exp]	16.6	0.9021

Compare expression of checked genes

Lus10022259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.