Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14345 146 / 3e-45 AtENODL21 early nodulin-like protein 21 (.1) AT3G18590 147 / 4e-45 AtENODL5 early nodulin-like protein 5 (.1) AT1G48940 142 / 4e-43 AtENODL6 early nodulin-like protein 6 (.1) AT4G28365 111 / 7e-31 AtENODL3 early nodulin-like protein 3 (.1) AT4G31840 108 / 5e-30 AtENODL15 early nodulin-like protein 15 (.1) AT1G79800 107 / 4e-29 AtENODL7 early nodulin-like protein 7 (.1) AT4G32490 103 / 2e-27 AtENODL4 early nodulin-like protein 4 (.1) AT3G20570 96 / 8e-25 AtENODL9 early nodulin-like protein 9 (.1) AT2G25060 91 / 3e-23 AtENODL14 early nodulin-like protein 14 (.1) AT4G30590 90 / 1e-22 AtENODL12 early nodulin-like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014880 [exp] 343 / 3e-122 AT3G18590 144 / 1e-43 early nodulin-like protein 5 (.1) Lus10032111 [exp] 212 / 2e-70 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10009617 [exp] 134 / 1e-39 AT3G18590 148 / 1e-45 early nodulin-like protein 5 (.1) Lus10014575 [exp] 119 / 2e-31 AT5G40640 714 / 0.0 unknown protein Lus10011158 [exp] 108 / 9e-30 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10043063 [exp] 102 / 2e-27 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10018617 [exp] 95 / 3e-24 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10039852 [exp] 94 / 3e-24 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10003432 [exp] 91 / 9e-23 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338800 [exp] 198 / 2e-65 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1) Potri.015G052000 [exp] 141 / 1e-42 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.015G113300 [exp] 137 / 7e-42 AT5G14345 110 / 9e-32 early nodulin-like protein 21 (.1) Potri.015G114600 [exp] 134 / 3e-40 AT5G14345 97 / 2e-26 early nodulin-like protein 21 (.1) Potri.001G085100 [exp] 98 / 1e-25 AT1G64640 150 / 3e-46 early nodulin-like protein 8 (.1) Potri.006G264600 [exp] 97 / 1e-25 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.001G187700 [exp] 97 / 3e-25 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.018G018200 [exp] 96 / 6e-25 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.003G050500 [exp] 95 / 2e-24 AT1G79800 162 / 1e-50 early nodulin-like protein 7 (.1) Potri.001G419200 [exp] 94 / 7e-24 AT3G20570 153 / 1e-46 early nodulin-like protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10022318 pacid=23139369 polypeptide=Lus10022318 locus=Lus10022318.g ID=Lus10022318.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCTGCTACTGCAATAACACTAGCATTGCCATAAAGAATGCATCAAAGCTTCTGCTCCTGGTGATGCTGCTGTATGCAACCGACTCAGTCA CTTCCTTTGAGTACCAAGTTGGTGCAGGGAAAGGATGGGTTGTTCCTCCTTCCAACGACACCAGAATCTACAATGACTGGGCTTCTGAGAACAGATTCAT CATTGGTGACACCGTCAGGTTTAAGTACAAGAAGGACTCGGTTATGGAGGTGAGCGAGGAAGAGTACAAGAAGTGCAATCCAAGCCATCCCAAGTACTTC TCCAACAACGGGAACACGGTGTACGAGCTGAATCATGCAGGGTCTTACTATTTCATCAGTGGAGTTTCTGGCCATTGCGGAAAGGGGCAGAAGATGATCA TCAAAGTGTTGACGACTTCTGATGATGATAATGGGAATGGAAGCAGCAACATAACTCCTTCCCATGGTGGTGGTGAAGATCCCAACAGAAAATCATCGTC AGCTGCAACTCTGCCTCTTGGTGGATTCCCTTCTTTTTTCTTGATCATGACAGCCATTGTTGCTTCCGTATTCTAA
AA sequence Show only first row Show all	>Lus10022318 pacid=23139369 polypeptide=Lus10022318 locus=Lus10022318.g ID=Lus10022318.BGIv1.0 annot-version=v1.0 MASSCYCNNTSIAIKNASKLLLLVMLLYATDSVTSFEYQVGAGKGWVVPPSNDTRIYNDWASENRFIIGDTVRFKYKKDSVMEVSEEEYKKCNPSHPKYF SNNGNTVYELNHAGSYYFISGVSGHCGKGQKMIIKVLTTSDDDNGNGSSNITPSHGGGEDPNRKSSSAATLPLGGFPSFFLIMTAIVASVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10022318 [exp]	0	1
					Lus10000538 [exp]	2.0	0.8540
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	3.7	0.8551
					Lus10026122 [exp]	17.7	0.8407
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10016403 [exp]	18.1	0.7335
AT4G26120			Ankyrin repeat family protein ...		Lus10024843 [exp]	18.8	0.7774
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10025736 [exp]	19.4	0.8103
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	22.2	0.8444
AT3G63390			unknown protein		Lus10018745 [exp]	22.3	0.7061
AT3G55240			Plant protein 1589 of unknown ...		Lus10003293 [exp]	23.0	0.8027
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10002019 [exp]	25.2	0.8430

Compare expression of checked genes

Lus10022318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.