Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27200 161 / 7e-51 Cupredoxin superfamily protein (.1) AT2G32300 104 / 8e-28 UCC1 uclacyanin 1 (.1) AT2G31050 91 / 8e-23 Cupredoxin superfamily protein (.1) AT2G26720 86 / 7e-21 Cupredoxin superfamily protein (.1) AT5G07475 85 / 7e-21 Cupredoxin superfamily protein (.1) AT3G17675 82 / 9e-21 Cupredoxin superfamily protein (.1) AT4G31840 83 / 3e-20 AtENODL15 early nodulin-like protein 15 (.1) AT1G72230 83 / 4e-20 Cupredoxin superfamily protein (.1) AT2G25060 83 / 5e-20 AtENODL14 early nodulin-like protein 14 (.1) AT5G26330 82 / 7e-20 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041570 [exp] 194 / 1e-63 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10027143 [exp] 95 / 3e-24 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10008720 [exp] 93 / 9e-24 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10022800 [exp] 90 / 2e-23 AT2G02850 100 / 4e-28 plantacyanin (.1) Lus10010533 [exp] 91 / 6e-23 AT5G26330 174 / 1e-55 Cupredoxin superfamily protein (.1) Lus10020944 [exp] 90 / 1e-22 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1) Lus10027043 [exp] 88 / 6e-22 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10021925 [exp] 85 / 7e-21 AT5G26330 170 / 5e-54 Cupredoxin superfamily protein (.1) Lus10041211 [exp] 85 / 9e-21 AT5G26330 167 / 6e-53 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G332200 [exp] 183 / 2e-59 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.007G120200 [exp] 100 / 2e-26 AT2G32300 118 / 3e-32 uclacyanin 1 (.1) Potri.003G047300 [exp] 94 / 5e-24 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.002G101300 [exp] 91 / 5e-23 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.003G150300 [exp] 90 / 9e-23 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.002G101200 [exp] 88 / 1e-21 AT1G72230 129 / 2e-37 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 86 / 2e-21 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.003G117900 [exp] 85 / 6e-21 AT3G17675 108 / 6e-31 Cupredoxin superfamily protein (.1) Potri.001G080700 [exp] 85 / 7e-21 AT5G07475 164 / 1e-51 Cupredoxin superfamily protein (.1) Potri.013G030000 [exp] 84 / 1e-20 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10022350 pacid=23139469 polypeptide=Lus10022350 locus=Lus10022350.g ID=Lus10022350.BGIv1.0 annot-version=v1.0 ATGGAGAACATCAAATCCCTTTTCATGTTGTTGTGTTTGGTCTGTGTTGGTTTGCTTGGAAGACACGCTTTAGCTGCTCAGCATACAGTAGGGGGAAGCC AAGGTTGGGAGGAATCCACAGACTTCAAGTCATGGGCATTGGCGCAGAAGTTCAAAGTTGGTGACCAACTTGTGTTCAAGTACAGTTCAGGGCTGCACAG TGTGGTGGAGCTAGGGAGTGAGTCAGCCTACAAAAGCTGTGCTCTTGGATCGCCATTGAACTCCATGAGCACAGGCAATGATGCTGTGAAGCTGGATAAA CCGGGGACGAGGTATTTCGCTTGTGGGACAGCAGGACATTGTGATCAAGGGATGAAGGTTAAGATCACAGTTGATTCTGGAAGTGGATCATCATCAACCA CACCAGCTTCACCTTCAGCTTCGTCTTCATCTTCAACTTCTGCTGCTGTTCATTCTGTTGTTGGTGTTGTTGGCTCCAGTGTTTTGATTGTGGGAATGCT GAGCTTGAGCTTAATGCTTCAATTGGTTTGA
AA sequence Show only first row Show all	>Lus10022350 pacid=23139469 polypeptide=Lus10022350 locus=Lus10022350.g ID=Lus10022350.BGIv1.0 annot-version=v1.0 MENIKSLFMLLCLVCVGLLGRHALAAQHTVGGSQGWEESTDFKSWALAQKFKVGDQLVFKYSSGLHSVVELGSESAYKSCALGSPLNSMSTGNDAVKLDK PGTRYFACGTAGHCDQGMKVKITVDSGSGSSSTTPASPSASSSSSTSAAVHSVVGVVGSSVLIVGMLSLSLMLQLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27200			Cupredoxin superfamily protein...		Lus10022350 [exp]	0	1
AT4G09990			Protein of unknown function (D...		Lus10005822 [exp]	1.7	0.9799
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10018208 [exp]	2.0	0.9789
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10008913 [exp]	3.5	0.9756
AT4G09990			Protein of unknown function (D...		Lus10005829 [exp]	3.9	0.9783
AT5G61340			unknown protein		Lus10034727 [exp]	4.0	0.9796
AT5G61340			unknown protein		Lus10021641 [exp]	4.2	0.9791
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036115 [exp]	4.9	0.9683
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10021731 [exp]	5.2	0.9709
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	6.5	0.9736
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10009922 [exp]	6.9	0.9715

Compare expression of checked genes

Lus10022350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.