Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46620 328 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50940 204 / 1e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 203 / 6e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50930 201 / 1e-59 BCS1 cytochrome BC1 synthesis (.1) AT5G17730 198 / 3e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 188 / 1e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 187 / 1e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17740 188 / 7e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 187 / 1e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30250 187 / 1e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008834 [exp] 532 / 0 AT2G46620 473 / 2e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030220 [exp] 366 / 3e-124 AT2G46620 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005991 [exp] 358 / 3e-121 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 211 / 9e-64 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 207 / 1e-63 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10014284 [exp] 205 / 1e-61 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10028463 [exp] 193 / 2e-57 AT3G50930 340 / 2e-111 cytochrome BC1 synthesis (.1) Lus10025479 [exp] 190 / 4e-57 AT5G57480 487 / 4e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007391 [exp] 193 / 5e-57 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G007800 [exp] 399 / 3e-137 AT2G46620 503 / 1e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G020800 [exp] 397 / 2e-136 AT2G46620 536 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G102300 [exp] 358 / 2e-121 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G175600 [exp] 353 / 4e-119 AT2G46620 627 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G024400 [exp] 216 / 8e-66 AT4G25835 362 / 4e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G231200 [exp] 213 / 1e-64 AT4G25835 359 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G032700 [exp] 209 / 7e-64 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.008G177200 [exp] 208 / 7e-63 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020900 [exp] 205 / 9e-62 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.005G119200 [exp] 203 / 4e-61 AT1G43910 530 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10022362 pacid=23171704 polypeptide=Lus10022362 locus=Lus10022362.g ID=Lus10022362.BGIv1.0 annot-version=v1.0 ATGAATAACGACGTCTCCGACGAAGTTAGCGGCAGGTGGAGGTCGGTTACGTTCACGCATCCGGCGACTATGGACACGGTGGTTATGGATGGGGATTTGA AGAGTAAGGTGAGATCTGATTTGGAATTGTTTTTGAAATCGAAGCAGTACTACCACCGCCTCGGCCGCGTATGGAAGCGAAGCTATCTACTGTACGGCGC CTCAGGGACGGGGAAATCGAGCTTCGTCGCCGCTATGGCGAGATTCCTAGGGTTTGATATCTACGAAATCGATGTCTCCAAGATCCGAAACTACTCGGAT CTGAAAACGCTCCTTCTCCAGACGACGAGCAAGTCAATGATCGTAATCGAGGATCTGGACCGTTACCTAGCGTCGAATTCCAAGGATATGGCGAATAACC TTACGGGAATGCTGAATTTCATGGACGGAATCATGTCATGCTGCGGCGAGGAGAGGGTGATGGTCTTCACGATGAGCTCCAAGGTCGGAATTGATCCTGC GATTCTACGGCCGGGGAGAATCGACGTCCAAGTCCATTTCCCCCTTTGCGATTTCCCGGCGATCAAGAGCCTGGCAAGCAATTACCTGGGAGTTAAAGAC CACAAGCTGTTCCCTCAGGTGGAGGAGATTCTACAGAGCGGTGGAGAGAGCTTGAGCCCAGCAGAGATCGGGGAAATCATGATCTCGAACAGAGGCTCCC CGAGCAGGGCGCTGAAGTCCGTGATTACGGCTCTCCAGGCTTCCGGCAGCAGAGGATCGAACAGTAACGATAACAGTGTGATTAAATTGTTGAGGGATAG CAGTAGATCGTCTACCGCGACGTCGACGGCGGCTGCGGCGGCGGAAGAAGGCGGAGGAGTGTTTTGTAGGGAGAGCGTTCACACGGTGAGGGAGTTCAGG AAATTGTATGGACTGTTGAAAATGGGGAGCCGGAGGAAAGACGAGAGTTCTGTTTCGGTTGCTTCTTCCGAAACGGGTGGGCCTGGGTCCGGCCCGTTTG AGAAAGAAAAGGAAGGGAAAATCGAGCCCATCAAATCTTGA
AA sequence Show only first row Show all	>Lus10022362 pacid=23171704 polypeptide=Lus10022362 locus=Lus10022362.g ID=Lus10022362.BGIv1.0 annot-version=v1.0 MNNDVSDEVSGRWRSVTFTHPATMDTVVMDGDLKSKVRSDLELFLKSKQYYHRLGRVWKRSYLLYGASGTGKSSFVAAMARFLGFDIYEIDVSKIRNYSD LKTLLLQTTSKSMIVIEDLDRYLASNSKDMANNLTGMLNFMDGIMSCCGEERVMVFTMSSKVGIDPAILRPGRIDVQVHFPLCDFPAIKSLASNYLGVKD HKLFPQVEEILQSGGESLSPAEIGEIMISNRGSPSRALKSVITALQASGSRGSNSNDNSVIKLLRDSSRSSTATSTAAAAAEEGGGVFCRESVHTVREFR KLYGLLKMGSRRKDESSVSVASSETGGPGSGPFEKEKEGKIEPIKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	0	1
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	1.4	0.9963
AT1G03220			Eukaryotic aspartyl protease f...		Lus10010278 [exp]	1.4	0.9974
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10002450 [exp]	3.5	0.9928
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030806 [exp]	4.5	0.9950
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10003913 [exp]	4.6	0.9894
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041973 [exp]	4.9	0.9953
					Lus10040445 [exp]	7.1	0.9905
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10034092 [exp]	8.1	0.9909
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	8.1	0.9909
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021314 [exp]	8.4	0.9918

Compare expression of checked genes

Lus10022362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.