Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50420 593 / 0 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT3G03450 248 / 2e-76 GRAS RGL2 RGA-like 2 (.1) AT1G66350 246 / 4e-76 GRAS RGL1 RGA-like 1 (.1) AT5G17490 236 / 4e-72 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 234 / 9e-71 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 233 / 9e-71 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G04890 223 / 2e-68 GRAS SCL21 SCARECROW-like 21 (.1) AT3G54220 224 / 2e-66 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G48150 216 / 4e-65 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 215 / 2e-63 GRAS SCL5 scarecrow-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009717 [exp] 852 / 0 AT1G50420 614 / 0.0 scarecrow-like 3 (.1) Lus10024177 [exp] 551 / 0 AT1G50420 582 / 0.0 scarecrow-like 3 (.1) Lus10039562 [exp] 549 / 0 AT1G50420 579 / 0.0 scarecrow-like 3 (.1) Lus10019773 [exp] 513 / 0 AT1G50420 543 / 0.0 scarecrow-like 3 (.1) Lus10034374 [exp] 279 / 9e-90 AT1G50420 279 / 2e-89 scarecrow-like 3 (.1) Lus10041540 [exp] 285 / 3e-89 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 283 / 1e-87 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10005078 [exp] 265 / 2e-84 AT1G50420 273 / 3e-87 scarecrow-like 3 (.1) Lus10017626 [exp] 248 / 5e-76 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G048700 [exp] 681 / 0 AT1G50420 682 / 0.0 scarecrow-like 3 (.1) Potri.001G023500 [exp] 605 / 0 AT1G50420 600 / 0.0 scarecrow-like 3 (.1) Potri.003G202100 [exp] 581 / 0 AT1G50420 568 / 0.0 scarecrow-like 3 (.1) Potri.004G208700 [exp] 298 / 3e-97 AT1G50420 303 / 7e-99 scarecrow-like 3 (.1) Potri.001G326000 [exp] 267 / 1e-82 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.008G131700 [exp] 258 / 6e-80 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 258 / 1e-79 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 252 / 2e-77 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.015G091200 [exp] 248 / 7e-77 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.012G093900 [exp] 244 / 1e-75 AT1G66350 257 / 2e-79 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10022418 pacid=23171728 polypeptide=Lus10022418 locus=Lus10022418.g ID=Lus10022418.BGIv1.0 annot-version=v1.0 ATGTTTCAAGATGATGGATCGTCCTCTGCCACGTCATCACCTCTCCAATTCTTCTCCATGATGCCAATTTCCCCTAATCTGAATTCCCCCTATCCATCAT GGTTGAGAGAGCTCAAATCTGAAGAGAGAGGGCTCTACTTGATCCATCTCTTGCTCACTTGTGCCAACCATGTAGCATCCGGCAGCCTTTCAAATGCTGA AATTGCCCTCGCCCAGATCTCCCAACTATCCGCACCAGATGGAGATACTATGCAGCGCATATCAGCCTATTTCACACAGGCACTTGCTGACAGGATCATC AAATCCTGGCCTGGCGTTCACAGCGCCCTCAATGCTGCCAAATTAGCCATCCCTTCTGAGGAATTCCTGGTCAAGAAATATTTCTATGACTTGTTCCCCT TCTTGAAAGTTGCATTCTTGCTCACCAACCAGGCCATAATGGATGCCATGGAAGGTGAAAAAATGGTTCATGTAATCGATCTTCACGCATCCGAATCTGC ACAGTGGATTGCGCTTCTCCAGAGTTTGAGCACTCGACAACCTGACGGTCCACCACATTTGAGGATTACAGGGATTCATCAGCAGAAGGAGGTTTTGGAT CGAATGAGCCGCGAACTAGTCGAAGAAGCTGAAAGGCTTGACATTCCGTTTCAGTTCAATCCCATTCTGAGCAGTAGTTTGGAGAATCTTGATGTTGAGA AACTGCGTGTCAAAACCGGGGAAGCACTGGCGATAAGCTCTGCTCTCCAGTTGCATCCTTTCCTTGGCTCTGATGATAATAATGAATCCTCGAGGAAGCT ATCAAACTCGAACTCTCATTTCCAAAGGCTGTTCATGGATAGCTTTCTTAATTTCCTGTGGAGTTTGTCGCCTAAGGTGATGGTGGTGACTGAGCAAGAC TCGAACCATAATGGGGTGACGTTGATGGAGAGGCTACTAGAGGCACTCCATTCGTATGCGGCTTTGTTCGACTGTCTGGAATCGAACGTGCCAAGAACTT CGGTGGAAAGGCTGAAGGTGGAGAGGATGCTGTTTGGGGAGCAGATAAAGAACATTGTTTCTTGCGAGGGAAGCGAGAGGAAGGAAAGGCACGAGAAATT GGAGAAGTGGATTCAAAGGCTTGAACTTGCCGGGTTTGGTAATGTTGGTTTGAGCTATTATGGGATGTTGCAGGGTAAGAGATTGCTGCAGACTTATGGA TGTGATGGTTATAGGATGAAGGAAGAGAATGGATGTGTAGTTATTGGATGGCAAGATAGGCCTCTTTTCTCCGTCTCAGCATGGAGGTGTAGGAAGTGA
AA sequence Show only first row Show all	>Lus10022418 pacid=23171728 polypeptide=Lus10022418 locus=Lus10022418.g ID=Lus10022418.BGIv1.0 annot-version=v1.0 MFQDDGSSSATSSPLQFFSMMPISPNLNSPYPSWLRELKSEERGLYLIHLLLTCANHVASGSLSNAEIALAQISQLSAPDGDTMQRISAYFTQALADRII KSWPGVHSALNAAKLAIPSEEFLVKKYFYDLFPFLKVAFLLTNQAIMDAMEGEKMVHVIDLHASESAQWIALLQSLSTRQPDGPPHLRITGIHQQKEVLD RMSRELVEEAERLDIPFQFNPILSSSLENLDVEKLRVKTGEALAISSALQLHPFLGSDDNNESSRKLSNSNSHFQRLFMDSFLNFLWSLSPKVMVVTEQD SNHNGVTLMERLLEALHSYAALFDCLESNVPRTSVERLKVERMLFGEQIKNIVSCEGSERKERHEKLEKWIQRLELAGFGNVGLSYYGMLQGKRLLQTYG CDGYRMKEENGCVVIGWQDRPLFSVSAWRCRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10022418 [exp]	0	1
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028370 [exp]	5.3	0.8712
AT3G14240			Subtilase family protein (.1)		Lus10017301 [exp]	5.5	0.8708
AT3G14240			Subtilase family protein (.1)		Lus10013187 [exp]	6.6	0.8887
AT3G14240			Subtilase family protein (.1)		Lus10037449 [exp]	7.1	0.8741
AT3G14240			Subtilase family protein (.1)		Lus10034517 [exp]	8.1	0.8653
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10000228 [exp]	9.0	0.8216
AT3G14240			Subtilase family protein (.1)		Lus10034178 [exp]	11.0	0.8499
AT5G53420			CCT motif family protein (.1.2...		Lus10019027 [exp]	12.1	0.8748
AT4G23490			Protein of unknown function (D...		Lus10024662 [exp]	13.5	0.8615
AT5G52180			unknown protein		Lus10015101 [exp]	14.1	0.8512

Compare expression of checked genes

Lus10022418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.