Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61890 129 / 7e-36 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G07310 123 / 2e-33 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G13330 105 / 5e-27 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G50080 95 / 4e-23 AP2_ERF ERF110 ethylene response factor 110 (.1) AT1G43160 94 / 4e-23 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT2G33710 94 / 8e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT2G47520 83 / 5e-19 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT5G47220 82 / 5e-18 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT5G44210 81 / 6e-18 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT4G34410 82 / 8e-18 AP2_ERF RRTF1 (Redox Responsive Transcription Factor1 ), ERF109 redox responsive transcription factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005805 [exp] 95 / 6e-22 AT5G61890 120 / 4e-32 Integrase-type DNA-binding superfamily protein (.1) Lus10006796 [exp] 94 / 8e-22 AT5G61890 122 / 8e-33 Integrase-type DNA-binding superfamily protein (.1) Lus10014054 [exp] 86 / 1e-19 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10003601 [exp] 84 / 2e-18 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037448 [exp] 84 / 4e-18 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10028679 [exp] 84 / 4e-18 AT5G61890 130 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Lus10008214 [exp] 83 / 4e-18 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10016827 [exp] 81 / 3e-17 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10013186 [exp] 81 / 4e-17 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G162500 [exp] 108 / 6e-28 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.001G067600 [exp] 107 / 1e-27 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.012G108500 [exp] 106 / 4e-27 AT5G61890 144 / 3e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.007G076800 [exp] 99 / 6e-24 AT2G33710 104 / 2e-26 Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G087200 [exp] 96 / 8e-23 AT2G33710 87 / 4e-20 Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G195000 [exp] 96 / 5e-22 AT5G50080 108 / 5e-27 ethylene response factor 110 (.1) Potri.009G101900 [exp] 89 / 3e-20 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.004G141200 [exp] 86 / 2e-19 AT4G34410 130 / 2e-36 redox responsive transcription factor 1 (.1) Potri.003G150800 [exp] 85 / 7e-19 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G163700 [exp] 86 / 1e-18 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10022426 pacid=23171668 polypeptide=Lus10022426 locus=Lus10022426.g ID=Lus10022426.BGIv1.0 annot-version=v1.0 ATGGATAGGAGGAGGAACAAGCACAAGAGTACTGGCGGGAAGAGGTCTAATATGAATGAATCGGAGGAAGACGGTAATAATATTAATAGGATGGATCCTG ATGGGTTCCCAGTCTACTCGGCTAGATCTCAGAGAGACTTGGACCTTATGGTCTCTGCTCTCTCTCAAGTCATCGGTACTAACTCTTCTTCTTCTTCACC GTCATCTCACATCCATGGCGCCGTCCCTCATCATCATCAACAACAACAACAACAACAACAACAACAACAACTTCCCTCTGTTCCAGAAAATGCTAATCAA GGAGGAGGTGGTGAAGTTGGGAGTAGTGAAAGAAGGCACTACAGAGGGGTTCGGCAAAGGCCGTGGGGGAAATGGGCGGCGGAGATAAGAGACCCAAAGA AGGCAGCACGTGTTTGGCTAGGCACCTTCGACACCGCTGAAGCTGCTGCTCTTGCTTACGACCAAGCTGCTCTCCGTTTCAAAGGCAGCAAGGCCAAGCT CAATTTCCCAGAACGTGTCCAGTTATCAACTAGCAGTAGTAACATTATTATTCCTCCAACTCATCATCATCATCATCCGAGCTCACAACTGGAACCTAAT TATATGTACCCTCATCAATTTGTTCCCAGTAGCGGCACTCATGGGGAAGCTCACAACAATAATTATAACTATGGTTTCAACTTGTTTAGCCCACAGGTAC CAACCATGTCTTCTACCTCATCATCTGGATCATCTCAGCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAACTGTTGAG GTTTTCCATGCAATTCGGAACTTGTAGTAACTATACTACTTCCCCTTCTTCCTCCACATATCCACCTCCTCCTCCTCCCCCGGATGATACAATGGATTAT TTCCACTAG
AA sequence Show only first row Show all	>Lus10022426 pacid=23171668 polypeptide=Lus10022426 locus=Lus10022426.g ID=Lus10022426.BGIv1.0 annot-version=v1.0 MDRRRNKHKSTGGKRSNMNESEEDGNNINRMDPDGFPVYSARSQRDLDLMVSALSQVIGTNSSSSSPSSHIHGAVPHHHQQQQQQQQQQQLPSVPENANQ GGGGEVGSSERRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDQAALRFKGSKAKLNFPERVQLSTSSSNIIIPPTHHHHHPSSQLEPN YMYPHQFVPSSGTHGEAHNNNYNYGFNLFSPQVPTMSSTSSSGSSQHHHHHQQQQQQQQQQQEELLRFSMQFGTCSNYTTSPSSSTYPPPPPPPDDTMDY FH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022426 [exp]	0	1
					Lus10019456 [exp]	2.4	0.8846
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	3.7	0.8952
AT1G09380			nodulin MtN21 /EamA-like trans...		Lus10001523 [exp]	5.8	0.8248
					Lus10020958 [exp]	7.3	0.8686
					Lus10021906 [exp]	8.5	0.8686
					Lus10039435 [exp]	8.7	0.7614
AT5G01750			Protein of unknown function (D...		Lus10007360 [exp]	9.4	0.7685
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	9.5	0.8686
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	10.4	0.8686
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	11.0	0.8455

Compare expression of checked genes

Lus10022426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.