Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50770 350 / 2e-120 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT5G50700 334 / 4e-114 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 334 / 4e-114 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50690 286 / 4e-96 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 286 / 4e-96 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT3G47350 270 / 1e-89 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT4G10020 271 / 8e-89 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT3G47360 261 / 6e-86 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT3G03330 94 / 7e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 86 / 6e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016748 [exp] 658 / 0 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10032556 [exp] 353 / 1e-121 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 340 / 1e-116 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10043187 [exp] 340 / 2e-116 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10031448 [exp] 337 / 3e-115 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10022442 [exp] 254 / 2e-83 AT3G47350 282 / 1e-94 hydroxysteroid dehydrogenase 2 (.1.2) Lus10006178 [exp] 246 / 1e-79 AT4G10020 485 / 8e-173 hydroxysteroid dehydrogenase 5 (.1) Lus10041045 [exp] 244 / 3e-78 AT4G10020 506 / 3e-180 hydroxysteroid dehydrogenase 5 (.1) Lus10001280 [exp] 239 / 1e-76 AT4G10020 495 / 5e-176 hydroxysteroid dehydrogenase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100000 [exp] 337 / 6e-116 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 331 / 1e-113 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.012G101900 [exp] 329 / 1e-112 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.012G102000 [exp] 325 / 6e-111 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048800 [exp] 298 / 1e-100 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048900 [exp] 298 / 3e-100 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.013G100200 [exp] 273 / 2e-90 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.019G073200 [exp] 260 / 4e-85 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.007G086600 [exp] 85 / 2e-18 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G084100 [exp] 81 / 2e-17 AT3G03330 446 / 2e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10022441 pacid=23171755 polypeptide=Lus10022441 locus=Lus10022441.g ID=Lus10022441.BGIv1.0 annot-version=v1.0 ATGCTGAGGACAATATTCAAGGAAGATGTCTCAGGAAAAGTGGTGCTGATAACAGGAGCATCTTCTGGCATAGGCGAGCATCTGGCGTACGAGTACGCGA AGAAAGGAGCGTGTCTAGCTCTGGTTGCTAGAAGAGAAGAGAAGCTCCGTGCTGTTGCAGCCAAAGCTGAGGAGATGGGAAGCCCTTATGCTCTAGTCCT CAAGGGAGATGTTGCCAATGTTGAAGACTGTCAGCAGTTTGTCAATGGAGCAGCTCACATATTTGGCAGACTGGATCACCTGGTTACCAACGCCGGAGTT TCTCCGATGACAATGTTCGAGGATATCCCTGATATCACCAACCTTGCACCTGCTATGGACATAAACTTCTGGGGATCAGTATATAGCTCGTATTTCGCAA TTCCACATCTGAAGCAAAGCCATGGCAAGATCATTGTGGTAGCTTCAGTTGCCTCGTGGTTGCCTGCTCCAAGAATGAGCTTCTACAATGCAAGTAAAGC AGCACTTGTTGCTATGTACGAAACACTGAGAGTGGAACTTGGGACACAAGTTGGAATAACAATTGTCACCCCTGGATTAATCCACTCAGAAATGACAGAC GGCAAGTTCTTGAACCAAAAAGGCCGCCTTCAAATGGATAAAGAAATTAGAGATATTCAAGTGAGTGTGATGCCATTAGAGTCTACTGCCGAATGTGCCA AAGCAATTGTTAATAGTGCATGTAGGGGAGATAAGTACTTGATAGAGCCAGAATGGTACCGATCCTTGTTTTGGTTCAAGGCCTTTTGCCCTGATGTCAT AGAGTGGAGCAACCGCTTCTATTTGCTCCCCTCACCTGGCCGATCTGCGAGCGAAGCCCCAAGCAAGAAGATTACAGACATAGCAAATCAATTTACCAAA TCTATCTTCAGTTTCCTAGAGAATCTCCCAAAGCTAGCCAGCGGAAGCTTCCTGCTTGATGAATACTAG
AA sequence Show only first row Show all	>Lus10022441 pacid=23171755 polypeptide=Lus10022441 locus=Lus10022441.g ID=Lus10022441.BGIv1.0 annot-version=v1.0 MLRTIFKEDVSGKVVLITGASSGIGEHLAYEYAKKGACLALVARREEKLRAVAAKAEEMGSPYALVLKGDVANVEDCQQFVNGAAHIFGRLDHLVTNAGV SPMTMFEDIPDITNLAPAMDINFWGSVYSSYFAIPHLKQSHGKIIVVASVASWLPAPRMSFYNASKAALVAMYETLRVELGTQVGITIVTPGLIHSEMTD GKFLNQKGRLQMDKEIRDIQVSVMPLESTAECAKAIVNSACRGDKYLIEPEWYRSLFWFKAFCPDVIEWSNRFYLLPSPGRSASEAPSKKITDIANQFTK SIFSFLENLPKLASGSFLLDEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	0	1
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	1.4	0.9820
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10004672 [exp]	2.2	0.9676
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	2.4	0.9772
AT5G46060			Protein of unknown function, D...		Lus10013943 [exp]	3.0	0.9720
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	4.0	0.9720
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	7.4	0.9560
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10034296 [exp]	7.5	0.9454
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10012923 [exp]	8.0	0.9620
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004519 [exp]	9.6	0.9334
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10012536 [exp]	11.0	0.9473

Compare expression of checked genes

Lus10022441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.