Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47350 236 / 1e-76 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT5G50700 237 / 3e-76 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 237 / 3e-76 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50770 232 / 1e-74 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT3G47360 231 / 2e-74 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G50590 226 / 8e-73 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT5G50690 226 / 8e-73 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT4G10020 191 / 6e-58 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT5G10050 76 / 9e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 74 / 4e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001511 [exp] 244 / 4e-79 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10022441 [exp] 240 / 6e-78 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10031448 [exp] 240 / 1e-77 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10032556 [exp] 239 / 2e-77 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10016748 [exp] 241 / 3e-76 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10043187 [exp] 229 / 4e-73 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10041045 [exp] 184 / 3e-55 AT4G10020 506 / 3e-180 hydroxysteroid dehydrogenase 5 (.1) Lus10006178 [exp] 182 / 4e-55 AT4G10020 485 / 8e-173 hydroxysteroid dehydrogenase 5 (.1) Lus10009467 [exp] 182 / 9e-55 AT4G10020 501 / 1e-178 hydroxysteroid dehydrogenase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G099900 [exp] 280 / 6e-94 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.015G100000 [exp] 275 / 1e-91 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G101900 [exp] 273 / 4e-91 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.012G102000 [exp] 272 / 1e-90 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048800 [exp] 271 / 3e-90 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048900 [exp] 238 / 3e-77 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.013G100200 [exp] 194 / 6e-60 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.019G073200 [exp] 191 / 3e-58 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.007G086600 [exp] 76 / 2e-15 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 74 / 6e-15 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10022442 pacid=23171699 polypeptide=Lus10022442 locus=Lus10022442.g ID=Lus10022442.BGIv1.0 annot-version=v1.0 ATGGGTTTGCGTCAGAAGTTTCTCAACATTGTGGTGCCTCCTTTGATCTTGTTTATAGTGCTTTTCTCGTTTCCACTGTTGCTGCTTCTGAGGGCGTTCA AGTATGTGATCCGGCGATTGTTCTTCAATAAGAATATGTCCGGTAAAGTAGTTGTCATCACCGGAGCATCTTCAGGAATCGGCGAGCAATTAGCTTACGA GTACGCAAGGAGAAGAGCGCGGTTAGCCATAGCGGCAAGAAGGGAAGATCGTCTACAGAGTGTGGCAACGAAAGCAAGGCAACTGGGATCCCCGGATGTG ATTTTCATACAGACTGATGTTTCCAAGGTTGAAGACTGTCACAAGCTTATTCGCGAAACTGTCGATCATTATGGCAGATTGGATCACTTGGTGAACAATG CTGGAGTTACCAAGCTTAGCTGGTTTGAGGGTTTCACCCCAACTTCTGAATTTCACGACCTTATGAATGTAAATTTCTGGGGGGCAGCATACTGTACCAA ATTCGGACTTCCACACTTGAGGAAATGTAAAGGGCAGATTGTGGTAATTTCTTCGGCTTCGGGACGTATACCCTGTCCTAAGATTGGTTTCTATGGGGCA AGTAAGGCTGCACTGATAAGCTTGTTCGAGGAACTGAGAATTGAAGTTGGTTCAGAGATTGGGATTACCCTAGTCACCCCTGGTTTAGTAACATCAGAGA TGTCCCAAGCTGCAGAAGTTCTATCAGAGCCATTTGTGAAGATGGTGCCACATGAATCTGCAGAGAGTTGTGCCAAGTCAATTGTGAAAAGTGCATGTCG AGGAGACAAGTCGTTGACTGAGCCAGCCTGGATGAGGATGTCCTTCCTGCTCAACTTTGCATGTCCTGAAATCATGCGCTTAGTCAATCGATTTGTAGTT GCTACCTTGAACCAAAAATAA
AA sequence Show only first row Show all	>Lus10022442 pacid=23171699 polypeptide=Lus10022442 locus=Lus10022442.g ID=Lus10022442.BGIv1.0 annot-version=v1.0 MGLRQKFLNIVVPPLILFIVLFSFPLLLLLRAFKYVIRRLFFNKNMSGKVVVITGASSGIGEQLAYEYARRRARLAIAARREDRLQSVATKARQLGSPDV IFIQTDVSKVEDCHKLIRETVDHYGRLDHLVNNAGVTKLSWFEGFTPTSEFHDLMNVNFWGAAYCTKFGLPHLRKCKGQIVVISSASGRIPCPKIGFYGA SKAALISLFEELRIEVGSEIGITLVTPGLVTSEMSQAAEVLSEPFVKMVPHESAESCAKSIVKSACRGDKSLTEPAWMRMSFLLNFACPEIMRLVNRFVV ATLNQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47350		ATHSD2	hydroxysteroid dehydrogenase 2...		Lus10022442 [exp]	0	1
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10027997 [exp]	35.0	0.8131
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	48.8	0.7920
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039640 [exp]	49.4	0.8167
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024573 [exp]	54.8	0.7701
AT1G25520			Uncharacterized protein family...		Lus10021697 [exp]	61.8	0.8118
AT5G26250			Major facilitator superfamily ...		Lus10002452 [exp]	89.0	0.8016
AT3G07530			unknown protein		Lus10040483 [exp]	104.1	0.8026
AT1G52080		AR791	actin binding protein family (...		Lus10038254 [exp]	117.6	0.7622
AT5G27730			Protein of unknown function (D...		Lus10020653 [exp]	135.9	0.7909
AT1G61500			S-locus lectin protein kinase ...		Lus10024081 [exp]	136.1	0.7839

Compare expression of checked genes

Lus10022442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.