Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66900 482 / 1e-158 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66910 447 / 4e-145 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G33300 366 / 5e-114 ADR1-L1 ADR1-like 1 (.1.2) AT5G04720 327 / 2e-99 PHX21, ADR1-L2 PHOENIX 21, ADR1-like 2 (.1) AT1G33560 320 / 5e-97 ADR1 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66890 295 / 1e-91 Leucine-rich repeat (LRR) family protein (.1) AT5G47280 290 / 2e-87 ADR1-L3 ADR1-like 3 (.1) AT5G66630 141 / 1e-34 DAR5 DA1-related protein 5 (.1) AT4G27220 94 / 2e-19 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 92 / 7e-19 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007359 [exp] 576 / 0 AT5G66900 473 / 3e-154 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10020779 [exp] 533 / 6e-179 AT5G66900 434 / 5e-141 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10016770 [exp] 385 / 2e-121 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10034761 [exp] 368 / 3e-118 AT5G66900 197 / 1e-54 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10021769 [exp] 273 / 4e-77 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10032759 [exp] 197 / 2e-53 AT1G33560 543 / 0.0 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10033299 [exp] 164 / 4e-46 AT5G66900 113 / 3e-29 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10033300 [exp] 103 / 4e-26 AT5G66630 46 / 8e-07 DA1-related protein 5 (.1) Lus10039850 [exp] 103 / 3e-22 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039100 [exp] 749 / 0 AT5G66900 474 / 3e-156 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039300 [exp] 643 / 0 AT5G66900 540 / 0.0 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039000 [exp] 603 / 0 AT5G66900 343 / 2e-107 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038700 [exp] 588 / 0 AT5G66900 481 / 3e-158 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038900 [exp] 430 / 3e-144 AT5G66900 336 / 4e-108 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.002G129300 [exp] 348 / 5e-107 AT4G33300 902 / 0.0 ADR1-like 1 (.1.2) Potri.014G035700 [exp] 331 / 7e-101 AT4G33300 889 / 0.0 ADR1-like 1 (.1.2) Potri.005G007001 [exp] 124 / 6e-29 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G039201 [exp] 109 / 5e-28 AT5G66910 86 / 1e-20 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.003G200800 [exp] 117 / 1e-26 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05659 [flax] [poplar] RPW8 Arabidopsis broad-spectrum mildew resistance protein RPW8 CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10022464 pacid=23171720 polypeptide=Lus10022464 locus=Lus10022464.g ID=Lus10022464.BGIv1.0 annot-version=v1.0 ATGTCGTCTTCTTTCCTCCAATCCACTGGCTCTGCTGCTGGTGGAGCTGGATTCAACATTCTTTTCGATGCCTTTCTCAAGGCAATCCTCAATGTCTCCA AGAAAAATACAATCTTCGAGCCCACCTTCCGCAGGCTTGAGAAGACCTTGCAGGCAATGGCTCCCGCAATCAAGAAGATCGATGTTTACAACATGGACTT CGATCGCCCTGACGAGATTGACGGGCTCAAGGCCATACTCAAGAAAGGTGCTGAGTTGGTCTCCAAGTGCTCCAAGATTAGCCGCTATGACATCATCAGG AAGCCCATGTACGCCAGTAAGCTTCTCAAGCTGGAAGACAAGCTTAAGAGGTACAACACCACTGTTCTTCAGGTTCATCAGGTCGCCGATCAGAAGGAGA TTCTGTTTGAAGTCAAGCAGCTCGGAAACCAGGTCAGGCAGATGAGCATGGGGGGAGCTTCGGCTTACGGTTTTTCTCCCGGTAACTTCGGCTTCTCACC TCCTTTCCTTAAGGTGGTTCCTGTTGGTTTGGAGATCCCATTGAAGGAACTTAAGAAAAAACTCTTGACGGATGCCCTTCCATTTCTTGTCTTGTCTGCT CCTGGAGGATGTGGAAAGACCACATTGGCCACTGCTTTTTGCCATGATCCACAAGTTAAAGTGAGGTTTAAGGACAACATCATCTATATCACCGTCTCCA GAGCGGCCAACCTGCTTACAATTGGGCAGAACATCTTTCAACGTTTGGGTCGCCGAGTGCCTTGTTTTCAAAGTGACGAAGATGCAGTAAACCAACTTGA ATGTCTGCTCAAGGATATGAATGGAGACCCTATACTTTTAGTTCTTGATGATGTTTGGTCTGGAGCAGAGTTTCTTCTTGAAAGGCTCTGCTTTAACTTT AAGATAACAAACTACCAGATATTAGTGACGTCAAGAGATGAATTTAAATCATTTGAATCTACATACAAATTACAGACATTGAGCGATGCAGATGCCATGA AACTCTTCCGTCAGTCAGCTTTTCCTACAGATGGACGCTCCTCATATGAGCGAGATGCGGAAGTTCAGGAGAAGATAGTTAAAAGCTGCAAGGGTTTTCC ACTACTGATTTCTGTGGTTGGCAAATCCTTACTCGGGAAACCTGCAGCAGACTGGCGTAATAGAGCCAAAGAATGTTCTAAGACTGCTTCCTTTCTTGAT AACGATGAGGTTCTCAATTGTCTCAAGAAAAGTGTTGATGCCTTGGATAACAAACAATCTATCAAAGAGTGTTACATGGATTTAGGATTGTTCCCTGAGG ACACTAAAATGCCTGCCACAGCCCTCCTTGATATATGGGTAGAACTACACGGGTTGGATGATGATTATGCTATGTCTAATCTCTATCAGCTCTCTTTCCG AAATCTAGTTGACCTCGTAGTCATCAGGAAAGATGCCAGTGAAAATGATGGCTTCCACAATGAGGATTTTGTGACGCAGCATGATCTGCTGCGAGATTTA GCTATCCGTCAAAGCAATTCCAGTAGCATTGAGGAAAGAGAAAGACTCTTTGTAGAAATAACTGGTAACAAGTTTCCTCATTGGTGGTTCGAAAGCACGG AGAAAGTCTTTAAGAGCAAACTCTTGTCCATTACCACAGATGAAAATTTCTCAGCAAGTTGGCTTGAGATTCATGCTCCTGAAGTTGAGGTGTTGGTTCT CAACTTTAAGACCCAGAACTATGCCTTACCCAAGTTTATTGAAAGAATGGAGAAGCTGAAGGTTCTGATAGTTACAAATCATGGGATGTGTCCAGCTAAC TTGAGTAACATCCATCATCTTGGTTCCCTATCTAATCTTAAGAGAATTAGGCTCGAGAAGATTTGGATCCCACCAGATTTCCTTCCAGCCATTGCATTAA GGAAGCTAGAAAAGTTAGCCTTGTTCATGTGCAACATTGGTGAAGCTTTTAGCAATGTAGACCTTGAGGCAGACTCATTCCCAAACATGGACGTGATCGA TATAGACTACTGTAGCGATTTGATGGCGTTACCAGTTTGGTTGTTTGAATTACACCAAATGAGGAAGCTGAGCATCAGCAACTGTCAAAACCTGACAGAA CTGCCAGAAGAACTAGGCAACTTGGGAAATTTGGAGGAGTTGAGGCTTAGTTCCTGTATAGAGTTGTCAGAGTTGCCAGAGACTATTGGAAACCTACGGA AGTTGACGACTCTGGACATATCCGATTGTGCAAGCATAAAGAAGCTGCCTGAACAAATTGGTGAGCTTTGCAACCTGAGGAAGCTGTACATGATAGAATG TGACCGCTGCGAACTACCGGCATCGGTAATGGAACTGAGCAAGCTGGAGGTAGTGATAGGGGATGAAGAAACAGCCAATTCATGGGAAGTTTATAAGCCT TACCTCCCAGGTTTGAAGGTCATAAAGCACAAACAAGTCAGCTTAGACTGGCTACAATAG
AA sequence Show only first row Show all	>Lus10022464 pacid=23171720 polypeptide=Lus10022464 locus=Lus10022464.g ID=Lus10022464.BGIv1.0 annot-version=v1.0 MSSSFLQSTGSAAGGAGFNILFDAFLKAILNVSKKNTIFEPTFRRLEKTLQAMAPAIKKIDVYNMDFDRPDEIDGLKAILKKGAELVSKCSKISRYDIIR KPMYASKLLKLEDKLKRYNTTVLQVHQVADQKEILFEVKQLGNQVRQMSMGGASAYGFSPGNFGFSPPFLKVVPVGLEIPLKELKKKLLTDALPFLVLSA PGGCGKTTLATAFCHDPQVKVRFKDNIIYITVSRAANLLTIGQNIFQRLGRRVPCFQSDEDAVNQLECLLKDMNGDPILLVLDDVWSGAEFLLERLCFNF KITNYQILVTSRDEFKSFESTYKLQTLSDADAMKLFRQSAFPTDGRSSYERDAEVQEKIVKSCKGFPLLISVVGKSLLGKPAADWRNRAKECSKTASFLD NDEVLNCLKKSVDALDNKQSIKECYMDLGLFPEDTKMPATALLDIWVELHGLDDDYAMSNLYQLSFRNLVDLVVIRKDASENDGFHNEDFVTQHDLLRDL AIRQSNSSSIEERERLFVEITGNKFPHWWFESTEKVFKSKLLSITTDENFSASWLEIHAPEVEVLVLNFKTQNYALPKFIERMEKLKVLIVTNHGMCPAN LSNIHHLGSLSNLKRIRLEKIWIPPDFLPAIALRKLEKLALFMCNIGEAFSNVDLEADSFPNMDVIDIDYCSDLMALPVWLFELHQMRKLSISNCQNLTE LPEELGNLGNLEELRLSSCIELSELPETIGNLRKLTTLDISDCASIKKLPEQIGELCNLRKLYMIECDRCELPASVMELSKLEVVIGDEETANSWEVYKP YLPGLKVIKHKQVSLDWLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66900			Disease resistance protein (CC...		Lus10022464 [exp]	0	1
AT1G71390		AtRLP11	receptor like protein 11 (.1)		Lus10016401 [exp]	3.5	0.8048
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Lus10018687 [exp]	3.9	0.8014
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10036136 [exp]	4.2	0.8480
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	6.3	0.8236
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10035685 [exp]	9.9	0.7638
AT4G12720		ATNUDX7, GFG1, ...	GROWTH FACTOR GENE 1, Arabidop...		Lus10006365 [exp]	11.1	0.8049
AT3G60450			Phosphoglycerate mutase family...		Lus10009779 [exp]	13.0	0.7933
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	15.2	0.7918
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	17.2	0.7833
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10024512 [exp]	17.2	0.7902

Compare expression of checked genes

Lus10022464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.