Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15940 350 / 8e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G04070 332 / 5e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 92 / 3e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 90 / 2e-19 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 89 / 4e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G37540 75 / 1e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G11410 69 / 2e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 67 / 3e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G53090 67 / 1e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 67 / 1e-11 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016771 [exp] 327 / 5e-106 AT5G15940 202 / 3e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024647 [exp] 84 / 1e-17 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032281 [exp] 79 / 8e-16 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 76 / 6e-15 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 76 / 7e-15 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10014975 [exp] 76 / 1e-14 AT4G23430 442 / 8e-157 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10038857 [exp] 76 / 2e-14 AT4G23430 436 / 2e-154 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10028534 [exp] 76 / 2e-14 AT4G27760 530 / 0.0 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 74 / 4e-14 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G453500 [exp] 375 / 8e-127 AT5G15940 405 / 5e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G083900 [exp] 84 / 1e-17 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128700 [exp] 81 / 1e-16 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G146600 [exp] 80 / 3e-16 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 78 / 3e-15 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 76 / 9e-15 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 74 / 3e-14 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 73 / 8e-14 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G081102 [exp] 71 / 3e-13 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 71 / 3e-13 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10022466 pacid=23171747 polypeptide=Lus10022466 locus=Lus10022466.g ID=Lus10022466.BGIv1.0 annot-version=v1.0 ATGAACGCAGGAATGAAGGAAATCGGCGACACTCTGCGCTTTATGTGTTATGCTGAGTTTTGGACGATGGGCTTGTTTTGGACGGTTTCGCTTTTGGTTT CTTACTGGCAGCTGTTTCTCAGAAGGATTACCGGGAGGGAAGAGACTTATCCACGTTGCGATCCTCCCAGAAATTTCCCCAGCCCTCCTGTTTGCATCGT TACTGGAGCCACATCTGGTCTAGGTGCAGCAGCTGCTTCTGCTCTGTCAAAACAAGGGTTTTACGTTGTTCTTGTAGGGCTATCATCAGAATTGCTGTCC CAGGTTTTGGCTTCTGTTGGTGCGTGGCAGGCTTTGAAAGAGATAAGAACACATAACAAGGAAGCCAAACTCAAAGGTTTTGTTGTTGACTTGAAGTCTT TCCAGTCAATCTTGGAGTTCAAAAGTTCTTTAGAGAAATGGTTATTGGATTCGGATATGCATTCTTCCATCCAGCTATTGATAAATAATGCAGGGATTTT GGCAACATCTCTTCATCGCACGACTGAAGGCTATGATCAGATGATGGGTACAAATTACACCGGTGCATTCTTTCTGACCAAAGCTATATTGCCGCTTCTC AAAAATAGCCCTGGTGGCTCACGGATAGTGAATGTGACATCATTTACTCATCGAGCAGGTATCAACTTCAAGCTAACCTGTAAAGTATGTCCAAAATTTA ATGAAGAATCTGTTACTGGGAAATGCTTCTTCGGATCGAAAGAATATCCTTATGCTCGTGTATATCAGTACTCCAAACTGTGCCTTCTCCTGTTCACATA TGAGCTTCATCGGCAACTCAAGTTGGAGGAGGGATCTAATCAAGTCTCTGTTATTGCTGCAGATCCAGGAATAGTGAAAACCAACATCATGCGTGAAGTT CCTTTATATCTTTCCCATGTCACGTTTCTGGTATTCAGGGTACTGGGACTCCTGCAGTCACCAGAGGATGGGATTAACTCCATCCTCGATGCCAGTTTTG CCCCATCACATGTATCTGGTGTTTACTTTTTCGGTGGAAAAGGAAGAACGTTGAAGTCTTCTGTGCTTTCTTACGATACAGAACTTGCAGAGAAGCTCTG GAGCATCTCTTGCGAACTGCTCTTCAAATTAAAACTTGCTTCCAAAGCCACCTCCTCGTCTATGTGGACAGAGCTACACTGTTCAACTTCGCCATCCTTA TTTCTGACGACTTCTGACGACGCGTTTGATCCGATCAAACGTTCTTCGAACAGAACGGCTTCGGCCAGAAGTAGTTCGTGCTTGGAAGGAATGTGCACAC GATATGCTTGGAGGTCACCGATCTTGAAGCAAACGATGCCTTCATCATCATCGTGTCTGTGGGAGGAAGGCAAAGAGTGGTTATCATCCAGGATGCATCC AGGGATGTTAAACCAGGTCCCAGGAACAATCAGATTGATCCTTCGGCAATTCTCTTTAAAGATTGCTGACATCTTGATCCTCTATGGAGCTCTTCACCAA GTTACTAATCCCATTGGCATCCATCAGATTGAGTTCCATATGGAGGTGCACGCCGGACCAACTCCCAAGGTGATTGCTATGAAAGGTGCAAAAACAGTAA AACTGACATGGCTCATTCTTGACATGTGA
AA sequence Show only first row Show all	>Lus10022466 pacid=23171747 polypeptide=Lus10022466 locus=Lus10022466.g ID=Lus10022466.BGIv1.0 annot-version=v1.0 MNAGMKEIGDTLRFMCYAEFWTMGLFWTVSLLVSYWQLFLRRITGREETYPRCDPPRNFPSPPVCIVTGATSGLGAAAASALSKQGFYVVLVGLSSELLS QVLASVGAWQALKEIRTHNKEAKLKGFVVDLKSFQSILEFKSSLEKWLLDSDMHSSIQLLINNAGILATSLHRTTEGYDQMMGTNYTGAFFLTKAILPLL KNSPGGSRIVNVTSFTHRAGINFKLTCKVCPKFNEESVTGKCFFGSKEYPYARVYQYSKLCLLLFTYELHRQLKLEEGSNQVSVIAADPGIVKTNIMREV PLYLSHVTFLVFRVLGLLQSPEDGINSILDASFAPSHVSGVYFFGGKGRTLKSSVLSYDTELAEKLWSISCELLFKLKLASKATSSSMWTELHCSTSPSL FLTTSDDAFDPIKRSSNRTASARSSSCLEGMCTRYAWRSPILKQTMPSSSSCLWEEGKEWLSSRMHPGMLNQVPGTIRLILRQFSLKIADILILYGALHQ VTNPIGIHQIEFHMEVHAGPTPKVIAMKGAKTVKLTWLILDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10022466 [exp]	0	1
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	4.0	0.9027
AT1G71110			unknown protein		Lus10013492 [exp]	4.2	0.8966
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10020162 [exp]	4.9	0.9010
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018781 [exp]	11.0	0.8948
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10000166 [exp]	11.2	0.8628
AT1G76480			unknown protein		Lus10006035 [exp]	15.3	0.8881
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	17.5	0.8857
AT1G11330			S-locus lectin protein kinase ...		Lus10015422 [exp]	17.5	0.8799
AT2G34930			disease resistance family prot...		Lus10016341 [exp]	18.1	0.8328
AT1G07650			Leucine-rich repeat transmembr...		Lus10010950 [exp]	19.6	0.8775

Compare expression of checked genes

Lus10022466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.