Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78080 187 / 5e-57 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT4G39780 166 / 1e-49 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G22190 145 / 1e-41 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT2G22200 135 / 1e-37 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G36060 122 / 4e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G65130 114 / 2e-29 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G64380 100 / 5e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G13620 100 / 1e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G20880 96 / 4e-22 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT4G28140 86 / 7e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016801 [exp] 393 / 2e-137 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10000582 [exp] 168 / 9e-51 AT4G39780 208 / 2e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10019665 [exp] 162 / 2e-48 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10033463 [exp] 163 / 2e-47 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10020913 [exp] 163 / 3e-47 AT1G78080 246 / 2e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10001898 [exp] 112 / 2e-28 AT1G64380 210 / 1e-65 Integrase-type DNA-binding superfamily protein (.1) Lus10003889 [exp] 110 / 7e-28 AT1G64380 197 / 4e-61 Integrase-type DNA-binding superfamily protein (.1) Lus10039809 [exp] 99 / 4e-23 AT2G20880 186 / 1e-55 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Lus10018578 [exp] 98 / 9e-23 AT2G20880 195 / 3e-59 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G077300 [exp] 229 / 1e-72 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.007G090600 [exp] 216 / 2e-67 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.002G094200 [exp] 174 / 1e-51 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G168700 [exp] 172 / 6e-51 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.017G055400 [exp] 103 / 2e-24 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.001G092400 [exp] 101 / 2e-24 AT1G64380 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Potri.001G315300 [exp] 97 / 3e-22 AT4G13620 194 / 3e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.019G102200 [exp] 96 / 6e-22 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.003G139300 [exp] 94 / 8e-22 AT1G64380 173 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Potri.013G135600 [exp] 96 / 9e-22 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10022497 pacid=23171739 polypeptide=Lus10022497 locus=Lus10022497.g ID=Lus10022497.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCTATAGATATGTACAATAACAGCGTAGGATCATCTTCTTCTTCCTCTTCTTCTTCTCTGAGATCTGGTTTCTCAGATCCTTGTAGTGGAG AGCTGGTGAAAGCACTTGAACCTTTTATGAACAGTGCTTCTCCATCTCCATTTATATCCCCTTCTTCTGGTGACATTTTTTCTCCTAATTTCTGCTCCCA ATCTCAGTCGAGCCCCGAAATAGGGTTCTCGATCTACAACCCCCAATTTAATTTCCCTTCTTCTTTAGGTCTAAACCAACTCAGGCCATCACAGATCTTC CAGATCCAGGCTCAATTTCAACTCCAGCAGGCTAATTTCGCCAACAACAACCACCACTTGTTGGCCCCAAAACCTGTCCCCATGAAGCAATCTGCAGCAG CTCCTCGTCATCAGAAGCCGACAAAGCTTTACAGAGGAGTGAGGCAGCGCCACTGGGGGAAATGGGTGGCGGAGATCAGACTGCCAAAGAACCGCACAAG GCTTTGGCTGGGAACTTTTGACTCCGCTGAAGAAGCTGCTCTGGCTTATGATCAAGCTGCTTATAAGCTGAGGGGTGACTTCGCTAGGCTCAATTTCCCG CATCTCAGCCACAAGGGTGCTCACATCTCGGGCGAGTTCGGTGACTACAAGCCTCTTCATTCCTCTGTGGAAGCCAAGCTCCAGGTAATTTGTCAGGATT TGGCTTCCTCTCAGAAGCAGGGCAAAACAACGCCTAATTCGAAAAGGGCCAAGGTTGTCCCCACAGCTGCTCCTCCTCCTTCTCCGCTTTTAAAAGTTGA GGAATCTGAAACTTTGACCGAGGAATCTAAAGTGAAGAGCCAGTCCGAGGAGTCCTTGAATGGATCTTCTTCTTCCCCTGAATCGGAGATTTCTTTCTTG GATTTCTCAGAATCTTCGAGCTGGGATCAGCATGAGAAATTGGGTTTGGAGAGTTACCCTTCTGAGGAGATCGACTGGGCTGCGATCTGA
AA sequence Show only first row Show all	>Lus10022497 pacid=23171739 polypeptide=Lus10022497 locus=Lus10022497.g ID=Lus10022497.BGIv1.0 annot-version=v1.0 MAAAIDMYNNSVGSSSSSSSSSLRSGFSDPCSGELVKALEPFMNSASPSPFISPSSGDIFSPNFCSQSQSSPEIGFSIYNPQFNFPSSLGLNQLRPSQIF QIQAQFQLQQANFANNNHHLLAPKPVPMKQSAAAPRHQKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDSAEEAALAYDQAAYKLRGDFARLNFP HLSHKGAHISGEFGDYKPLHSSVEAKLQVICQDLASSQKQGKTTPNSKRAKVVPTAAPPPSPLLKVEESETLTEESKVKSQSEESLNGSSSSPESEISFL DFSESSSWDQHEKLGLESYPSEEIDWAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10022497 [exp]	0	1
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10016801 [exp]	1.0	0.9544
AT3G22970			Protein of unknown function (D...		Lus10014718 [exp]	1.4	0.9267
AT5G39865			Glutaredoxin family protein (....		Lus10001669 [exp]	3.5	0.9113
AT5G46760	bHLH	bHLH005, ATR2, ...	Basic helix-loop-helix (bHLH) ...		Lus10035365 [exp]	4.2	0.8911
AT4G32020			unknown protein		Lus10001940 [exp]	5.0	0.8946
AT1G75860			unknown protein		Lus10033130 [exp]	5.3	0.9042
AT4G32020			unknown protein		Lus10001936 [exp]	7.5	0.8851
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	7.7	0.8571
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000037 [exp]	13.0	0.8588
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	13.8	0.8734

Compare expression of checked genes

Lus10022497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.