Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10180 771 / 0 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 695 / 0 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) AT1G22150 548 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT4G08620 547 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G78000 523 / 2e-179 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT3G51895 499 / 5e-170 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G02700 469 / 3e-158 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT3G15990 461 / 5e-155 SULTR3;4 sulfate transporter 3;4 (.1) AT1G23090 459 / 1e-154 SULTR3;3, AST91 sulfate transporter 91 (.1) AT5G19600 411 / 4e-136 SULTR3;5 sulfate transporter 3;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016806 [exp] 1123 / 0 AT5G10180 889 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Lus10029616 [exp] 553 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10041111 [exp] 551 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 549 / 0 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10006612 [exp] 496 / 1e-168 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 486 / 2e-163 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10034603 [exp] 469 / 1e-157 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10035897 [exp] 429 / 1e-142 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10025766 [exp] 429 / 1e-142 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088700 [exp] 830 / 0 AT5G10180 837 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Potri.005G079000 [exp] 810 / 0 AT5G10180 828 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Potri.002G092400 [exp] 746 / 0 AT1G77990 826 / 0.0 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) Potri.005G167300 [exp] 584 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 556 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.010G082700 [exp] 522 / 6e-179 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 504 / 5e-172 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 494 / 4e-168 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 492 / 2e-167 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.010G111700 [exp] 469 / 2e-158 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10022502 pacid=23171643 polypeptide=Lus10022502 locus=Lus10022502.g ID=Lus10022502.BGIv1.0 annot-version=v1.0 ATGTCAGCTTCAGAAGCCATAGCAGCAACTGCTGCAAATGACCTCGAGAAAGCTGCAACAGATGACGTTACTGTTGGACATGGTCATGGCCACAACAACA ACAACAGCAACAACAACTCCCACTGGGTGGTGGATTGTCCACCACCTCCTGGAATTTGGAGTCTGTTTTTCCATTCTCTGAGAACAACTTTCTCTTTCAA CAAGTACCATAGCCAGCCTGCCTCCCAGAACCTTTTGTTTGTGTTGCAGTCCTTATTTCCTATACTCTCTTGGGCTAGATTCTACAAGCTTAACATGTTC AAAAAAGATGTTATGGCTGGCCTTACCCTTGCCAGTCTCTGCATTCCTCAGAGTATCGGGTACGCGACTCTAGCTAATCTTGAACCTCAATATGGACTCT ACACAAGTGTGGTGCCGCCACTGATATACGCTGTGATGGGGACATCAAGAGAGATAGCAATCGGGCCGGTAGCAGTAGTGTCGTTGCTGCTGTCGTCAAT GATTCAGAAGCTGGAGGATCCGGTTTCAAATCCAGTTGGTTTCAGGAACATGGCTCTGACAGCAACTCTGTTCGCGGGAGTATTCCAGGCTGCATTTGGT GTGTTGAGGTTGGGTTTCCTTGTGGACTTCCTTTCACATGCTGCTATTGTTGGATTTATGGCTGGAGCTGCCATCGTCATCGGCCTTCAGCAGCTTAAGG GTCTCCTTGGCATTTCTCACTTCACCAATAAGACCGATATCGTCTCTGTCGTCAGAGCCATTTGGACTTCTCTTCATCACTCTTGGAATCCTTACAATTT CATTCTGGGATCTGCCTTCTTGTGCTTCATCCTCATCACCAGATTTATTGGGAGAAGGTACAAGAAGCTCTTCTGGCTAGCTGCAGTGTCCCCATTAATC TCGGTTGCCATGGCGACGTTAATAGTTTTCCTGACGAAAGCTGATGAGCATGGAGTTAAGATTATAAAGCATATAAAAGGAGGGTTAAACCCAAGCTCTG TCCATCAATTACAGTTCAAAGACCCACATATTGGCGAAATCGCCAAAATTGGACTTGTCGTTGCGGTTATTGCTCTCACTGAAGCAATTGCTGTAGGGAG GTCATTCTCAACCATGAAAGGTTACAGCATCGACGGGAACAAGGAAATGGTTGCCATGGGATTCATGAACATTGTTGGTTCCTGCACTTCTTGCTATGTT GCCACTGGTTCGTTCTCTCGGAGTGCGGTAAATTTTAGTGCGGGGTGCGAGACAGCAGTGTCGAATATAGTGATGGCAGTGACAGTAATATTGTGCTTGG AACTGTTCACAAGGATGCTATACTACACTCCAATGGCCATCCTGGCTTCGATTATTCTTTCGGCTCTACCAGGGCTCATCGATTTCCCAGAAGCCCCTGG AACTGAGATTCTAGGAAGGTTACCAGGAACTGATGTCTACTGTGACATTAGTCAATACCCTATGGCCATTCAGACTCCTCCTGTTCTCACTATCCGCCTC AAGTCAGGATTGCTCTGCTTTGCCAATGCCAATTTCGTCAAAGAAAAGGTTATGAGATGGGCAACTAAAGGGGATGAACACAGTAGCAAGTTAAATGGGA GAAGGGCCATCCAACTTGTGGTTCTTGACCTTTCTAATCTGATGAACATTGATGTATCAGGAATAGCCTCCTTAGAAGAGCTGCACAAGAATCTTATCTC TAAGGGAGTGGAGTTGGCCATCAGCAACCCAAGATGGGAAGTGATACACAAGCTAAAGTTGGCAAACTTTGTGAATAAACTAGGTGGGAAGGTGTTTCTG ACTGTTGGAGAAGCCATTGATGCATGCCTCGGTGCTAAAGTAATGGCTGCCATTTGA
AA sequence Show only first row Show all	>Lus10022502 pacid=23171643 polypeptide=Lus10022502 locus=Lus10022502.g ID=Lus10022502.BGIv1.0 annot-version=v1.0 MSASEAIAATAANDLEKAATDDVTVGHGHGHNNNNSNNNSHWVVDCPPPPGIWSLFFHSLRTTFSFNKYHSQPASQNLLFVLQSLFPILSWARFYKLNMF KKDVMAGLTLASLCIPQSIGYATLANLEPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKLEDPVSNPVGFRNMALTATLFAGVFQAAFG VLRLGFLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDIVSVVRAIWTSLHHSWNPYNFILGSAFLCFILITRFIGRRYKKLFWLAAVSPLI SVAMATLIVFLTKADEHGVKIIKHIKGGLNPSSVHQLQFKDPHIGEIAKIGLVVAVIALTEAIAVGRSFSTMKGYSIDGNKEMVAMGFMNIVGSCTSCYV ATGSFSRSAVNFSAGCETAVSNIVMAVTVILCLELFTRMLYYTPMAILASIILSALPGLIDFPEAPGTEILGRLPGTDVYCDISQYPMAIQTPPVLTIRL KSGLLCFANANFVKEKVMRWATKGDEHSSKLNGRRAIQLVVLDLSNLMNIDVSGIASLEELHKNLISKGVELAISNPRWEVIHKLKLANFVNKLGGKVFL TVGEAIDACLGAKVMAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10022502 [exp]	0	1
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10015370 [exp]	1.0	0.9191
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10024422 [exp]	3.5	0.9025
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10025511 [exp]	4.9	0.8925
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024875 [exp]	6.0	0.8971
					Lus10038478 [exp]	6.5	0.8662
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031780 [exp]	10.0	0.8907
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009103 [exp]	10.1	0.8643
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10016806 [exp]	14.1	0.8615
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	14.5	0.8726
AT5G03110			unknown protein		Lus10026490 [exp]	15.9	0.8734

Compare expression of checked genes

Lus10022502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.