Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18590 93 / 9e-24 AtENODL5 early nodulin-like protein 5 (.1) AT1G48940 91 / 3e-23 AtENODL6 early nodulin-like protein 6 (.1) AT1G79800 91 / 5e-23 AtENODL7 early nodulin-like protein 7 (.1) AT3G20570 84 / 3e-20 AtENODL9 early nodulin-like protein 9 (.1) AT4G28365 79 / 2e-18 AtENODL3 early nodulin-like protein 3 (.1) AT2G25060 76 / 3e-17 AtENODL14 early nodulin-like protein 14 (.1) AT4G27520 77 / 8e-17 AtENODL2 early nodulin-like protein 2 (.1) AT4G32490 75 / 1e-16 AtENODL4 early nodulin-like protein 4 (.1) AT5G57920 74 / 1e-16 AtENODL10 early nodulin-like protein 10 (.1) AT4G31840 71 / 3e-15 AtENODL15 early nodulin-like protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016621 [exp] 218 / 2e-73 AT3G18590 68 / 5e-15 early nodulin-like protein 5 (.1) Lus10032111 [exp] 92 / 1e-23 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10009617 [exp] 92 / 3e-23 AT3G18590 148 / 1e-45 early nodulin-like protein 5 (.1) Lus10018617 [exp] 89 / 5e-22 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10026880 [exp] 84 / 3e-20 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10003432 [exp] 84 / 6e-20 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10039852 [exp] 83 / 1e-19 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10043063 [exp] 81 / 4e-19 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10011158 [exp] 79 / 5e-18 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G052000 [exp] 86 / 7e-21 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.011G135400 [exp] 84 / 3e-20 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.017G011200 [exp] 84 / 5e-20 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.001G419200 [exp] 84 / 7e-20 AT3G20570 153 / 1e-46 early nodulin-like protein 9 (.1) Potri.011G117800 [exp] 84 / 2e-19 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.001G398800 [exp] 84 / 4e-19 AT4G28365 145 / 9e-42 early nodulin-like protein 3 (.1) Potri.001G187700 [exp] 80 / 1e-18 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.006G264600 [exp] 79 / 2e-18 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.003G050500 [exp] 77 / 2e-17 AT1G79800 162 / 1e-50 early nodulin-like protein 7 (.1) Potri.001G338800 [exp] 75 / 5e-17 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10022522 pacid=23166915 polypeptide=Lus10022522 locus=Lus10022522.g ID=Lus10022522.BGIv1.0 annot-version=v1.0 ATGGCCACCACCACCACCACCAATCTCTTCTTCATCACTCTGCTATTGTTTATGTTCCTCTCCGGCTCCGCCGTTGTGAATCATTATCGTCAATTCCGAG TTGGAGGCAGCAGAGGCTGGGCCCCATCCCCACCGGACACCGGATCCCACTCCTTGTACTACAATCAATGGGCTCAAAACAGATTCCACGTCGGCGATTC CCTCATTTTCGTTTACAGCAGCAATGAATCTGAGTCGGTGCTGCTAGTTAACTCCACTGCCTACTCCAACTGCATCCTCTCCCACCCAATCCTCCGTCTT CAAAACACCACTTTCCAGTTTGATCGGCCAGGTCTATTCTACTTCATCAGCGGCCACGTCGGGAGCTGCATTTCCGGCCAGAAGCTGGTGGTCCAAGTCA TGGACGACGAACAAGAAACAGAAGAAGATGATGGACCAAGCCCTGCTCCTGCTGGTAACGACAACGAGGATCTGATATGGGATGGTCTAAATTGGCCGCC GGCCATTAATTCAACCGTTAAGACCACCATTGCCTCCTACTTCATCACTGCTCTTGGCGGTGTCCTCGTTATTCTATACTTGTTGATGTAG
AA sequence Show only first row Show all	>Lus10022522 pacid=23166915 polypeptide=Lus10022522 locus=Lus10022522.g ID=Lus10022522.BGIv1.0 annot-version=v1.0 MATTTTTNLFFITLLLFMFLSGSAVVNHYRQFRVGGSRGWAPSPPDTGSHSLYYNQWAQNRFHVGDSLIFVYSSNESESVLLVNSTAYSNCILSHPILRL QNTTFQFDRPGLFYFISGHVGSCISGQKLVVQVMDDEQETEEDDGPSPAPAGNDNEDLIWDGLNWPPAINSTVKTTIASYFITALGGVLVILYLLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10022522 [exp]	0	1
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036114 [exp]	4.5	0.8536
AT3G45230			hydroxyproline-rich glycoprote...		Lus10022582 [exp]	8.2	0.8495
AT3G45230			hydroxyproline-rich glycoprote...		Lus10021479 [exp]	8.8	0.8360
AT1G06475			unknown protein		Lus10025392 [exp]	10.8	0.8138
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002985 [exp]	17.5	0.8023
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10018171 [exp]	17.7	0.8051
AT5G49690			UDP-Glycosyltransferase superf...		Lus10008955 [exp]	21.7	0.8079
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10020408 [exp]	22.6	0.7954
AT1G06475			unknown protein		Lus10015269 [exp]	23.7	0.7919
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026595 [exp]	26.8	0.7828

Compare expression of checked genes

Lus10022522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.