Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 183 / 1e-56 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 179 / 2e-55 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 179 / 3e-55 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G29260 176 / 4e-54 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 174 / 9e-54 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 170 / 4e-52 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 171 / 1e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 160 / 2e-47 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 159 / 3e-47 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 142 / 3e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010544 [exp] 352 / 3e-123 AT3G51680 216 / 2e-69 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004908 [exp] 346 / 7e-121 AT3G51680 209 / 1e-66 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034626 [exp] 317 / 2e-109 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 313 / 6e-108 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 248 / 3e-82 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013595 [exp] 245 / 3e-81 AT2G47140 224 / 3e-73 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021257 [exp] 245 / 3e-81 AT2G47140 222 / 3e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 233 / 3e-76 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 232 / 6e-76 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206500 [exp] 244 / 7e-81 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 244 / 7e-81 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 233 / 2e-76 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 231 / 2e-75 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 228 / 2e-74 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 228 / 3e-74 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 227 / 7e-74 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 206 / 1e-65 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 197 / 1e-62 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 196 / 5e-62 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10022562 pacid=23166938 polypeptide=Lus10022562 locus=Lus10022562.g ID=Lus10022562.BGIv1.0 annot-version=v1.0 ATGTCTTCCGATGCCTCCACTTCCAAGAGATTAGTAGGCAAGGTTGCGGTGATCACCGGGGGAGCCAGTGGGATTGGAGCCACCACAGCAGATGTCTTCG CCAAACACGGCGCTAAAGTTATAATCGCCGATGTGCAATCGGACTTAGGCCAATCAGTAGCGGAAGAGATCAACTCTCGCTACCCGGACAGCCAGACCTC GTTTATCAAATGCGACGTTTCCATGGAATCAGATGTTGAGGCGGCAGTAGACGCTACCATCTCGGCCCACGGGAAGCTGGACATCATGTTCAGCAATGCC GGGATTGCAGGGGGATTCAGCGGGTTCCAGATTGGAACAATGGAGGCAGAGGATCTGAAAAGAGTGTTGGAGGTGAACGTGATGGGTGGGTTCTTCTGTG CGAAGCATGCGGCTAGGGTGATGGCTCCGAAGCAAAAGGGGGTGATCCTGTTCACTGCGAGCGTGGTGACCGAGACGTTTGGGTACGGCCCCCACACGTA CACAGCGTCGAAGCACGCGTTGGTCGGGCTGATGAAGAACCTGTGCGTGGAGTTGGGCCCTTCTGGGATTCGAGTCAACTCGATTTCACCAGCTGGGGTC CCCACACCCATGGTTTTTAGTGCTACGGGAATGGACAGAAAGACTGTTCAGGATTATAATTCGCAGAAGGCTGGACTCAAAGGTGCGGTTTTGGACGAAG ACGATGTTGCTAAGGCTGCTCTGTACTTGGCTAGTGACGAGTCCCAGTTCGTAAGTGGGGTCAACCTTGTGTTGGATGGGGGATTAAACTTGAGGAGTGC CTAA
AA sequence Show only first row Show all	>Lus10022562 pacid=23166938 polypeptide=Lus10022562 locus=Lus10022562.g ID=Lus10022562.BGIv1.0 annot-version=v1.0 MSSDASTSKRLVGKVAVITGGASGIGATTADVFAKHGAKVIIADVQSDLGQSVAEEINSRYPDSQTSFIKCDVSMESDVEAAVDATISAHGKLDIMFSNA GIAGGFSGFQIGTMEAEDLKRVLEVNVMGGFFCAKHAARVMAPKQKGVILFTASVVTETFGYGPHTYTASKHALVGLMKNLCVELGPSGIRVNSISPAGV PTPMVFSATGMDRKTVQDYNSQKAGLKGAVLDEDDVAKAALYLASDESQFVSGVNLVLDGGLNLRSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29250		AtSDR4	short-chain dehydrogenase redu...		Lus10022562 [exp]	0	1
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10012767 [exp]	1.0	0.9744
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10016334 [exp]	2.0	0.9560
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002892 [exp]	2.0	0.9339
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004443 [exp]	2.2	0.9325
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016211 [exp]	2.6	0.9315
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001109 [exp]	3.5	0.9322
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10016177 [exp]	5.3	0.8802
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10002750 [exp]	7.5	0.9126
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10028914 [exp]	10.0	0.8536
AT3G52360			unknown protein		Lus10029348 [exp]	11.4	0.8470

Compare expression of checked genes

Lus10022562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.