Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55950 563 / 0 Nucleotide/sugar transporter family protein (.1) AT5G57100 432 / 4e-151 Nucleotide/sugar transporter family protein (.1) AT2G30460 122 / 3e-31 Nucleotide/sugar transporter family protein (.1.2) AT1G06890 120 / 9e-31 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G28315 113 / 3e-28 Nucleotide/sugar transporter family protein (.1) AT5G42420 112 / 9e-28 Nucleotide-sugar transporter family protein (.1.2) AT1G21070 110 / 5e-27 Nucleotide-sugar transporter family protein (.1) AT1G76670 108 / 2e-26 Nucleotide-sugar transporter family protein (.1) AT4G09810 99 / 4e-23 Nucleotide-sugar transporter family protein (.1) AT1G34020 94 / 3e-21 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016648 [exp] 693 / 0 AT5G55950 603 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10020017 [exp] 432 / 5e-151 AT5G57100 507 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10015541 [exp] 433 / 3e-146 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10037397 [exp] 120 / 3e-30 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 115 / 9e-29 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10021464 [exp] 108 / 3e-26 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10008596 [exp] 106 / 3e-25 AT2G30460 569 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10041314 [exp] 104 / 3e-25 AT2G28315 420 / 1e-148 Nucleotide/sugar transporter family protein (.1) Lus10035824 [exp] 103 / 2e-24 AT1G21070 545 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G370800 [exp] 565 / 0 AT5G55950 541 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.006G072500 [exp] 427 / 4e-149 AT5G57100 499 / 2e-177 Nucleotide/sugar transporter family protein (.1) Potri.018G139500 [exp] 425 / 2e-148 AT5G57100 504 / 1e-179 Nucleotide/sugar transporter family protein (.1) Potri.004G211900 [exp] 124 / 3e-32 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.009G011100 [exp] 122 / 3e-31 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.013G154800 [exp] 120 / 6e-31 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.019G128900 [exp] 115 / 1e-28 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.005G260300 [exp] 113 / 5e-28 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G000500 [exp] 108 / 1e-26 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G196500 [exp] 93 / 6e-21 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10022563 pacid=23166900 polypeptide=Lus10022563 locus=Lus10022563.g ID=Lus10022563.BGIv1.0 annot-version=v1.0 ATGGCGTTGATGGATTCTTTGCTGGGAAATGAAGGCAGGAGATTCATCAAGCGGAAAGACAGTGATGCTGGAGAAACAGGTAGAGCTCTGGAAGAGCTGC GAGGGACTCTATACAATGATCTTAGAACCGCAGAAGGAGCCAAGAAGCAGCAGCAGAGATTCTGTGGACCTGTTGTGGCCATGACTTTCAATTTTGTTGT CTCTATTGGGATCATCATGACTAACAAAATGGTAATGGTGAAAGTTGGATTCAATTACCCAATCTTTCTGACACTGATCCATTACTCAGTAGCTTGGGTG TTGCTGGCAATATTCAAATCACTGGCTTTACTCCCAGTGTCTCCTCCAACTAAGGCAACTCCTTACACTTCCCTCTTCTCCTTGGGGGTTGTCATGTCTT TTGCTTCTGGACTTGCCAATGCCAGTCTCAATCATAACAGCATTGGGTTCTATCAGATGGCTAAGATTGCAGTCACCCCAACCATTGTTTTTGCGGAATT CATTCTCTTCAGAAAAACAATCTCTCATAACAAGGTTGTGGCTCTGGGTGTTGTCTCAGCAGGTGTGGCACTTGCACAAGTCACTGATTTACAGTTTAAT TTCTTTGGTGCTTGTATTGCCATTGCCTGGATAATTCCAAGTGCTATCAACAAGATTTTATGGTCTAGTCTCCAACAGCAAGCCAACTGGACTGCCCTTG CGTTGATGTGGAAGACAACACCAGTCACAGTTCTGTTCCTACTAGCTCTAAGGCCATGGCTGGACCCACCTGGAGCTCTGTTGTTCAAGTGGGATCTCCA AAACTCATCTGCTGTTCTTATGTCAGCTCTGCTTGGCTTTCTCCTCCAATGGTCTGGTGCTTTAGCTCTCGGGGCCACATCGGCAACTTCTCATGTAGTA TTAGGACAGTTCAAGACATGTATGATCTTGCTAGGTGGATACTTGCTGTTCGAATCGGATCCCGGGTTTATAAGCATATGTGGAGCAGTGGTAGCACTTG GGGGGATGTCAGTTTACGCATCGCTCAACTTGAAGGAGATGAAAAAAGAGAGTTTGAGCAACACACAGCAGAAGCAGGCGTTACCAGTGTCTAAACCAAA GACAGAACTGGAACCAACTCCTGAAGAGAGTACAGAAGAGGTTGAATCCTCTATGTCTTCAAGTGCTGTCTGA
AA sequence Show only first row Show all	>Lus10022563 pacid=23166900 polypeptide=Lus10022563 locus=Lus10022563.g ID=Lus10022563.BGIv1.0 annot-version=v1.0 MALMDSLLGNEGRRFIKRKDSDAGETGRALEELRGTLYNDLRTAEGAKKQQQRFCGPVVAMTFNFVVSIGIIMTNKMVMVKVGFNYPIFLTLIHYSVAWV LLAIFKSLALLPVSPPTKATPYTSLFSLGVVMSFASGLANASLNHNSIGFYQMAKIAVTPTIVFAEFILFRKTISHNKVVALGVVSAGVALAQVTDLQFN FFGACIAIAWIIPSAINKILWSSLQQQANWTALALMWKTTPVTVLFLLALRPWLDPPGALLFKWDLQNSSAVLMSALLGFLLQWSGALALGATSATSHVV LGQFKTCMILLGGYLLFESDPGFISICGAVVALGGMSVYASLNLKEMKKESLSNTQQKQALPVSKPKTELEPTPEESTEEVESSMSSSAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55950			Nucleotide/sugar transporter f...		Lus10022563 [exp]	0	1
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10027761 [exp]	1.4	0.9729
AT3G14170			Plant protein of unknown funct...		Lus10013177 [exp]	2.8	0.9679
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	3.5	0.9727
AT3G25290			Auxin-responsive family protei...		Lus10038225 [exp]	5.0	0.9486
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	5.5	0.9726
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10015298 [exp]	6.3	0.9632
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	6.9	0.9666
AT5G22400			Rho GTPase activating protein ...		Lus10022700 [exp]	7.9	0.9612
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	7.9	0.9638
AT5G45290			RING/U-box superfamily protein...		Lus10035680 [exp]	8.1	0.9600

Compare expression of checked genes

Lus10022563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.