Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47670 288 / 7e-94 Transmembrane amino acid transporter family protein (.1) AT4G35180 205 / 3e-62 LHT7 LYS/HIS transporter 7 (.1) AT5G40780 147 / 2e-40 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G61270 137 / 7e-37 Transmembrane amino acid transporter family protein (.1) AT1G48640 133 / 3e-35 Transmembrane amino acid transporter family protein (.1) AT1G24400 131 / 1e-34 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G25530 130 / 4e-34 Transmembrane amino acid transporter family protein (.1) AT3G01760 126 / 9e-33 Transmembrane amino acid transporter family protein (.1) AT1G67640 119 / 2e-30 Transmembrane amino acid transporter family protein (.1) AT1G71680 85 / 6e-18 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003338 [exp] 538 / 0 AT1G47670 565 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10025113 [exp] 427 / 8e-148 AT1G47670 529 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10023971 [exp] 425 / 5e-147 AT1G47670 526 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032751 [exp] 305 / 5e-100 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10011668 [exp] 302 / 4e-99 AT1G47670 918 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10015997 [exp] 272 / 1e-87 AT1G47670 450 / 2e-154 Transmembrane amino acid transporter family protein (.1) Lus10022642 [exp] 226 / 7e-70 AT4G35180 431 / 7e-148 LYS/HIS transporter 7 (.1) Lus10003339 [exp] 222 / 1e-68 AT1G47670 410 / 9e-140 Transmembrane amino acid transporter family protein (.1) Lus10022329 [exp] 135 / 4e-36 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012900 [exp] 357 / 2e-120 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 346 / 3e-116 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.009G140800 [exp] 333 / 5e-111 AT1G47670 509 / 6e-177 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 303 / 1e-99 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181000 [exp] 276 / 5e-90 AT1G47670 405 / 5e-138 Transmembrane amino acid transporter family protein (.1) Potri.004G181100 [exp] 270 / 6e-87 AT1G47670 384 / 2e-128 Transmembrane amino acid transporter family protein (.1) Potri.008G179000 [exp] 133 / 2e-35 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.001G335300 [exp] 132 / 5e-35 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 130 / 3e-34 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G055800 [exp] 130 / 3e-34 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10022641 pacid=23178519 polypeptide=Lus10022641 locus=Lus10022641.g ID=Lus10022641.BGIv1.0 annot-version=v1.0 ATGGGTGAGAGGTTATCAAACATATTGGCGATGGTCCCAATAATGAACCTGTCGGGCGGAACTTGCACAGCCCTGATCATCATAGGCGGGTCCACATCGA AGCTTTTGTTCCAGACATTATGTGGGGCCACGTGCTCGGCGAATCAACATGCGCCAACTACCATCGAGTGGTACTTGATTTTCACATTAGCGGTAGCCAT ACTGTCCCAGCTTCCTAACTTGAACTCTATCGCCGGAGTCTCTTTGATCGGATCGATCACGGCTATATGGTATTGTTCATTGATATGGGTTGTGTCGGTA GCTGAAGGATGGGTTCCCGGGGTTTCGTATAACCTGGCCACAATGCCTTCAAGTGAAAAGCATCCATCAACAGTACCAATGTGGAAAGGAGTCAAAGTTG CCTATGCCCTAATTGCCATCTGCCTTTTCCCTCTAGCAATTGGAGGCTATTGGGCTTATGGTCAATTGATCCCAGCAGGAGGGATGTTGACCGCGCTATT CGCGTTCCACGGGCAAGACACGTCAAGATTCATCCTAGGCCTGACCAGCTTTTTCGTGGTGGTGAACGCACTGAGCTCGTTCCAACTCTACGCAATGCCG ATATTTGACCAAATGGAGTCGTCGGTGGTGACCAAGACGAAGAAGGCCTGCCCCCGGTGGCTCAGGTCAATGATGCGTGTCTTCTTCGTGCTCGTGTGCT TCTTCATCGCAGTCGCGATACCCTTCCTGGGGAGCGTGGCGGGTCTCATCGGAGGGATCTCGCTTCCCGTCACGCTGGCTTACCCTTGCTTCACGTGGCT CAAGGTGAAGAAGCCAACCCGATATAGTTGGATGTGGGTGGTGAAGGGGCTTGGTGTCTTTGGGTTGCTCTTGAGTGGGGCTTTGATTGTGACTGGTGTT TATGTTGTGGTTGATAATGGAATTGAGTTTAACTTCTCAAGCCCCAATAGTTGGCCTGCAAGATCGAGCCTTCAAATCAGTGAGGTTAACGGTAGTTCAA TCGTTTAA
AA sequence Show only first row Show all	>Lus10022641 pacid=23178519 polypeptide=Lus10022641 locus=Lus10022641.g ID=Lus10022641.BGIv1.0 annot-version=v1.0 MGERLSNILAMVPIMNLSGGTCTALIIIGGSTSKLLFQTLCGATCSANQHAPTTIEWYLIFTLAVAILSQLPNLNSIAGVSLIGSITAIWYCSLIWVVSV AEGWVPGVSYNLATMPSSEKHPSTVPMWKGVKVAYALIAICLFPLAIGGYWAYGQLIPAGGMLTALFAFHGQDTSRFILGLTSFFVVVNALSSFQLYAMP IFDQMESSVVTKTKKACPRWLRSMMRVFFVLVCFFIAVAIPFLGSVAGLIGGISLPVTLAYPCFTWLKVKKPTRYSWMWVVKGLGVFGLLLSGALIVTGV YVVVDNGIEFNFSSPNSWPARSSLQISEVNGSSIV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47670			Transmembrane amino acid trans...		Lus10022641 [exp]	0	1
AT1G80450			VQ motif-containing protein (....		Lus10026247 [exp]	1.7	0.9889
AT1G71520	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041044 [exp]	2.6	0.9859
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	3.7	0.9914
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10021313 [exp]	4.5	0.9899
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Lus10039383 [exp]	5.1	0.9824
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10004808 [exp]	6.0	0.9850
AT4G08250	GRAS		GRAS family transcription fact...		Lus10008316 [exp]	8.2	0.9799
					Lus10010257 [exp]	10.2	0.9867
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10019060 [exp]	10.5	0.9844
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10022762 [exp]	11.1	0.9875

Compare expression of checked genes

Lus10022641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.