Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35180 396 / 5e-134 LHT7 LYS/HIS transporter 7 (.1) AT1G47670 380 / 3e-127 Transmembrane amino acid transporter family protein (.1) AT5G40780 235 / 3e-72 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G61270 216 / 1e-64 Transmembrane amino acid transporter family protein (.1) AT1G24400 214 / 5e-64 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G48640 214 / 6e-64 Transmembrane amino acid transporter family protein (.1) AT3G01760 208 / 9e-62 Transmembrane amino acid transporter family protein (.1) AT1G25530 202 / 2e-59 Transmembrane amino acid transporter family protein (.1) AT1G67640 201 / 3e-59 Transmembrane amino acid transporter family protein (.1) AT1G71680 173 / 2e-48 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003339 [exp] 852 / 0 AT1G47670 410 / 9e-140 Transmembrane amino acid transporter family protein (.1) Lus10015997 [exp] 404 / 9e-137 AT1G47670 450 / 2e-154 Transmembrane amino acid transporter family protein (.1) Lus10003338 [exp] 399 / 3e-134 AT1G47670 565 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10023971 [exp] 387 / 1e-129 AT1G47670 526 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032751 [exp] 385 / 4e-129 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10025113 [exp] 385 / 7e-129 AT1G47670 529 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10011668 [exp] 384 / 7e-129 AT1G47670 918 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10022641 [exp] 224 / 2e-69 AT1G47670 302 / 4e-99 Transmembrane amino acid transporter family protein (.1) Lus10041581 [exp] 220 / 2e-66 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G181100 [exp] 549 / 0 AT1G47670 384 / 2e-128 Transmembrane amino acid transporter family protein (.1) Potri.004G181000 [exp] 522 / 0 AT1G47670 405 / 5e-138 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 457 / 1e-157 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 397 / 7e-134 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.009G140800 [exp] 388 / 3e-130 AT1G47670 509 / 6e-177 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 379 / 6e-127 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G179000 [exp] 229 / 4e-70 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 220 / 1e-66 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 219 / 3e-66 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G335300 [exp] 217 / 3e-65 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10022642 pacid=23178606 polypeptide=Lus10022642 locus=Lus10022642.g ID=Lus10022642.BGIv1.0 annot-version=v1.0 ATGGCTGAAGTTCACCCAATTGATCAAGAATCTCCACACGTCACGATCATCACCATTGATGAAACTTCAGAGGAGGGTGCTAATCCCCATCCTGATGCTA CAAGGATTCCAGAAGCAGTAGCTGAAGAAGAAGCCAATAACCCAGTTGACGCTTGGCTGCCTATAACAGAATCCAGAAAGGGGAGCCTTTGGAGCTGTGT CTTCCATTTGGTCTCTTCTGGTATTGGTGTCCAAGCTTTGCTTCTACCAGTGGCATTTGCTTCCCTTGGATGGGCATGGGGTATTGTAAGCTTGACAATA GCTTTCATATGGCAGCTCTACACAATATGGGTTCTAGTCCAGCTCCATCAACCAGCAGTCCATGGAACTCGTTACAGTAGATTTCTTCAGCTTTCAATCG CCGCTTTTGGTCCAACGCTGGGCAAGCTCCTGGCGATATTCCCAGTGATGTACCTATCAGGAGGATCATGCGTAGTGTTCATAATCACAGGGAGTGGAGC CATGGAGCTCTTCTTCAAGGAGATCTCGTCAAGCTCCGTTGCATTGACCGGAGCAGAGTGGTTCTTGGTATTCACAGCCATGGCGATACTAATGGCTGCA CAGCGTCCGAATCTGCACTCCATTTCTGGATTCTCGCTCGTTGCTGCCGTCACTGGGGTTGCCTACTGCACGATCTTGTGGGCAATCCCAGTTGCCAATG GCAGAGTTGATGATGCTCGTTCAGAGATGAAGGTGGAATCTGGGATGGGTAGAGTGAGTGAGGTTCTGAATGGGATTGGGATTCTCATGCTTTCCTTCAG AGGGCATAATCTTGTCCTTGAGATTCAGGGGACATTGGCTTCAGGGCCTAAAGCTTCATCAAAGAAGAAGATGTGGAGGGCAGTGATCATCTCATATGCA ATAGTCATGGCTTGCTTGTTCCCTCTTGCCATTGCTGGGTTTTGGGCTTATGGAAACAAGGTACCTTCAAGTGGGGGGTTACTCAAGGCATTCACAAACT TCCACCAGCCAAACACATCAAAGCCACTAAAAGCCATCATCTACTTCCTCATCCTCCTAAACTGCCTAACATCCTTCCAAATCTACGCCATGCCGGTCTT CGATAACCTCGAAAGCAGATTCGTGGCCCTAAAAAACAAGCCATGTCCGAAATGGGTTCGAGTTTCGACCAAGCTCTTCTTCGGAGGGTTAACTTTCTTC ATCGCCGTCGCCTTCCCGTTCCTGCCCAGCCTAGCTCCGTTGGTGGGTGGGATTGCCCTGCCCCTCACTTTTGCCTATCCTTGCTTGATGTGGGTTGCCA TGAAGAAGGGGAAATCCGCACACCGTCAGGATTCTTTGGTTTGGGGTTTTAATTTGTTAGTTGGTAGTTTGGGAATGGGATTGAGTGTTCTTTTGGTGGT TGGTGCTATTTGGAATTTGGCTACAAAGGGACTTCGTGCCAATTTTTTTAGACCATAA
AA sequence Show only first row Show all	>Lus10022642 pacid=23178606 polypeptide=Lus10022642 locus=Lus10022642.g ID=Lus10022642.BGIv1.0 annot-version=v1.0 MAEVHPIDQESPHVTIITIDETSEEGANPHPDATRIPEAVAEEEANNPVDAWLPITESRKGSLWSCVFHLVSSGIGVQALLLPVAFASLGWAWGIVSLTI AFIWQLYTIWVLVQLHQPAVHGTRYSRFLQLSIAAFGPTLGKLLAIFPVMYLSGGSCVVFIITGSGAMELFFKEISSSSVALTGAEWFLVFTAMAILMAA QRPNLHSISGFSLVAAVTGVAYCTILWAIPVANGRVDDARSEMKVESGMGRVSEVLNGIGILMLSFRGHNLVLEIQGTLASGPKASSKKKMWRAVIISYA IVMACLFPLAIAGFWAYGNKVPSSGGLLKAFTNFHQPNTSKPLKAIIYFLILLNCLTSFQIYAMPVFDNLESRFVALKNKPCPKWVRVSTKLFFGGLTFF IAVAFPFLPSLAPLVGGIALPLTFAYPCLMWVAMKKGKSAHRQDSLVWGFNLLVGSLGMGLSVLLVVGAIWNLATKGLRANFFRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35180		LHT7	LYS/HIS transporter 7 (.1)		Lus10022642 [exp]	0	1
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019833 [exp]	1.0	0.9962
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10023207 [exp]	2.4	0.9856
					Lus10000859 [exp]	5.5	0.9848
AT1G78780			pathogenesis-related family pr...		Lus10029763 [exp]	6.0	0.9855
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	6.8	0.9860
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001276 [exp]	7.3	0.9847
AT1G20925			Auxin efflux carrier family pr...		Lus10016046 [exp]	7.5	0.9785
					Lus10027919 [exp]	7.7	0.9803
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10027614 [exp]	7.9	0.9823
AT5G40690			unknown protein		Lus10010488 [exp]	9.2	0.9780

Compare expression of checked genes

Lus10022642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.