Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21850 730 / 0 SKS8 SKU5 similar 8 (.1) AT1G21860 717 / 0 SKS7 SKU5 similar 7 (.1) AT4G38420 712 / 0 SKS9 SKU5 similar 9 (.1) AT1G76160 712 / 0 SKS5 SKU5 similar 5 (.1) AT1G41830 711 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT4G22010 661 / 0 SKS4 SKU5 similar 4 (.1) AT4G28090 630 / 0 SKS10 SKU5 similar 10 (.1) AT5G66920 600 / 0 SKS17 SKU5 similar 17 (.1) AT1G55560 578 / 0 SKS14 SKU5 similar 14 (.1) AT1G55570 572 / 0 SKS12 SKU5 similar 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003346 [exp] 943 / 0 AT1G21860 627 / 0.0 SKU5 similar 7 (.1) Lus10023977 [exp] 899 / 0 AT5G63810 822 / 0.0 beta-galactosidase 10 (.1) Lus10025107 [exp] 822 / 0 AT1G41830 645 / 0.0 SKU5 SIMILAR 6, SKU5-similar 6 (.1) Lus10005649 [exp] 706 / 0 AT1G76160 889 / 0.0 SKU5 similar 5 (.1) Lus10034560 [exp] 699 / 0 AT1G76160 894 / 0.0 SKU5 similar 5 (.1) Lus10021238 [exp] 689 / 0 AT1G76160 892 / 0.0 SKU5 similar 5 (.1) Lus10021832 [exp] 677 / 0 AT1G76160 865 / 0.0 SKU5 similar 5 (.1) Lus10030045 [exp] 661 / 0 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10035282 [exp] 659 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180500 [exp] 746 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 712 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 696 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 667 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.004G010100 [exp] 657 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.014G154500 [exp] 656 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.007G038300 [exp] 617 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.001G000500 [exp] 571 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.007G038200 [exp] 569 / 0 AT4G37160 771 / 0.0 SKU5 similar 15 (.1) Potri.003G224100 [exp] 561 / 0 AT1G55570 855 / 0.0 SKU5 similar 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10022648 pacid=23178635 polypeptide=Lus10022648 locus=Lus10022648.g ID=Lus10022648.BGIv1.0 annot-version=v1.0 ATGAATCATCTCTTCTTCTTCTTCTTCTCCATATCGGCTTTGCTCTACTCCGAGGACATTCTGGTCAACGCCGGCGACCCTGTCAGGAACTTCGACTGGA AAGTCACCTATGGCGAAATGAAGCCTTTAGGAATCAAACAGCGGGTGATTCTGATCAATGGGAAGTTTCCTGGTCCGACTATTAACGCCGTTAGTAACGA TAATCTCATCGTTAACGTCCACAACCACCTCGACGAACCTTTCCTGCTTTCCTGGAGCGGAATCCAGAATCGAAAGAACTCGTACGTTGACGGAGTGTAC GGGACGACGTGCCCAATCCCTCCAGGGAAGAACTACACGTACAAGCTCCAGGCTAAGGATCAGATCGGGACCTTTTACTACTTCCCGTCCCTTGGTTTCC ACAAGGCCGCCGGCGGGTTCGGAGGGATCAATGTCAACAGCCGTCCGTTGATTCCTGTCCCGTTTCATCCGCCGGCCGGGGATATCACTCTCCTAGTCGG AGATTGGTATAGAGCTGACCACAAGGTTTTGAAAGCAAAGCTTGATAAGGGTCACAAACTTGGGTTCCCTAATGGAGTTCTAATCAATGGCCATGGACCT AAATCTCCTCCAACTTTCACTTTCCAATCTGGGAAGAAATACCAGCTTAGAATTACGAACGTCGGACTTCAGAACTCTTTGAATTTCAGGATTCAGGGGC ATGACTTGGAACTCGTGGAAGTTGAGGGAACTCACGTTGTCCAAATGACGTACTCTTCATTGGATGTACACGTAGGACAATCGATGTCGATCTTGGTGAC AACTAATCAACCGGCTAAGGACTACAAAATCTATGTATCGACTCGATTTTCCAACAAAACACTTGAAACGACATCGATCCTTCACTACCAACACTCGGAT GGGCCAGCCAATGGCTCTATACCGGTCGCTCCCAACCAAATAAGTTGGTCTATGAATCAAGCACTTTCCATAAGGACAAATCTATCGGCCAGCGCAGCAA GACCGAACCCACAAGGCTCATACCACTATGGGACAGTGAACGTTTCCAGAACGATAATCTTGAGAAGCGCGTCTTCTCAGGTAGAAAAAAAGCAAAGATA CGGGATCAATGGGGTTTCCTTCGTTCCTTCGGACACTCCACTCAAGCTAGCTGATCACTTCAACATCTCAGGCGTTTTTGAGATCGGAAGCATCCCCGAC ATCCCTCCCAACGGTCCAAAGAAGCTTCATTTGGATACGTCTGTAATGGAAACCGATTATAGGTCGTTTGTGGAGATTGTGTTTCAGAATCGCGAGCAAA TGGTTAAGACATGGCACATCAATGGCTACTCATTTTGGGTTGTTGGAATGGATATCGGAACTTGGAAGCCAGATAGCAGAAAGTTGTACAATCTAAACGA CGCTGTTTCGCGTTATACTATACAGGTGTATCCAAGGTCATGGACAGCAATCTATGTGGCACTAGACAATGTAGGGATGTGGAATGTGAGGACAGAGTAT TGGCAGAGGCAGTACCTTGGGGAACAATTCTACCTAAGAGTGTTCACCACGTCAAACTCAACTAGGGATGAATATTTGATGCCCAAGGATTCCCTCCTTT GTGGTAGAGCCAAGAACATGAAACCCTAA
AA sequence Show only first row Show all	>Lus10022648 pacid=23178635 polypeptide=Lus10022648 locus=Lus10022648.g ID=Lus10022648.BGIv1.0 annot-version=v1.0 MNHLFFFFFSISALLYSEDILVNAGDPVRNFDWKVTYGEMKPLGIKQRVILINGKFPGPTINAVSNDNLIVNVHNHLDEPFLLSWSGIQNRKNSYVDGVY GTTCPIPPGKNYTYKLQAKDQIGTFYYFPSLGFHKAAGGFGGINVNSRPLIPVPFHPPAGDITLLVGDWYRADHKVLKAKLDKGHKLGFPNGVLINGHGP KSPPTFTFQSGKKYQLRITNVGLQNSLNFRIQGHDLELVEVEGTHVVQMTYSSLDVHVGQSMSILVTTNQPAKDYKIYVSTRFSNKTLETTSILHYQHSD GPANGSIPVAPNQISWSMNQALSIRTNLSASAARPNPQGSYHYGTVNVSRTIILRSASSQVEKKQRYGINGVSFVPSDTPLKLADHFNISGVFEIGSIPD IPPNGPKKLHLDTSVMETDYRSFVEIVFQNREQMVKTWHINGYSFWVVGMDIGTWKPDSRKLYNLNDAVSRYTIQVYPRSWTAIYVALDNVGMWNVRTEY WQRQYLGEQFYLRVFTTSNSTRDEYLMPKDSLLCGRAKNMKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21850		SKS8	SKU5 similar 8 (.1)		Lus10022648 [exp]	0	1
					Lus10011078 [exp]	8.7	0.9920
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040310 [exp]	8.7	0.9886
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Lus10038346 [exp]	11.1	0.8468
					Lus10011832 [exp]	12.3	0.9920
AT3G05610			Plant invertase/pectin methyle...		Lus10033466 [exp]	12.6	0.9585
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040324 [exp]	12.9	0.9521
					Lus10027689 [exp]	15.1	0.9920
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025669 [exp]	17.4	0.9920
AT2G43610			Chitinase family protein (.1)		Lus10003584 [exp]	18.3	0.7495
AT1G29010			unknown protein		Lus10013977 [exp]	18.3	0.9517

Compare expression of checked genes

Lus10022648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.