Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08250 70 / 1e-12 GRAS GRAS family transcription factor (.1) AT1G66350 68 / 5e-12 GRAS RGL1 RGA-like 1 (.1) AT3G50650 67 / 1e-11 GRAS SCL7 GRAS family transcription factor (.1) AT5G66770 64 / 1e-10 GRAS GRAS family transcription factor (.1) AT5G48150 64 / 1e-10 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT3G03450 64 / 1e-10 GRAS RGL2 RGA-like 2 (.1) AT1G55580 62 / 4e-10 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT2G01570 61 / 7e-10 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G54220 61 / 8e-10 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G17490 59 / 3e-09 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012236 [exp] 503 / 7e-176 AT3G03450 83 / 1e-16 RGA-like 2 (.1) Lus10002204 [exp] 495 / 2e-172 AT3G03450 87 / 7e-18 RGA-like 2 (.1) Lus10002205 [exp] 237 / 6e-72 AT3G60630 71 / 1e-12 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) Lus10040166 [exp] 218 / 8e-62 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10012237 [exp] 195 / 4e-58 AT3G60630 66 / 2e-11 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) Lus10008316 [exp] 91 / 2e-19 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10028056 [exp] 84 / 3e-17 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10027123 [exp] 81 / 3e-16 AT1G55580 298 / 5e-97 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Lus10032882 [exp] 78 / 2e-15 AT1G55580 294 / 2e-95 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G122500 [exp] 393 / 2e-132 AT3G03450 85 / 3e-17 RGA-like 2 (.1) Potri.009G075500 [exp] 268 / 5e-85 AT4G08250 85 / 2e-17 GRAS family transcription factor (.1) Potri.005G175300 [exp] 97 / 2e-21 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.002G086100 [exp] 93 / 4e-20 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.001G473200 [exp] 77 / 4e-15 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.015G008300 [exp] 77 / 6e-15 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.012G020200 [exp] 74 / 6e-14 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.005G190300 [exp] 70 / 1e-12 AT4G08250 138 / 7e-36 GRAS family transcription factor (.1) Potri.007G026300 [exp] 69 / 3e-12 AT5G66770 589 / 0.0 GRAS family transcription factor (.1) Potri.005G123800 [exp] 68 / 5e-12 AT5G66770 650 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10022664 pacid=23178526 polypeptide=Lus10022664 locus=Lus10022664.g ID=Lus10022664.BGIv1.0 annot-version=v1.0 ATGATAAATCCACCTCCCTCCTTCACCGATCTCCAGCCGTCGGAGGACGACGATATGGACATCATCATCAACACCTCCATCCACCATTTCTCCGACCAAC TCTCGCCGGATTGCTCCTCCGACGGACTGGCCATGATCACCCTGTCCACCGAGGAGCTCCTCATGAACATCAGCGATACCAACAATAGTGATGCCTCGCC GATGGAAACAGCGATTTCGACGGACAGTCTGGACATCCCGTCGGAGGAGACCGAACTCGGCAACCAGGTGAGCGTCTTCCACCTGCTGAAGGCGTACGGA GAAGCGATGGAAGCAGGACAGGGGGAACTAGCGGATGTGATCATGGCGAGCGTTAGCGAAAAGGTGAGCCCCGCCGGAGATCCGTTAGAGCGGCTAGGGT TCAATCTGTCGAAGGATCTATACAACAAGGAAGCAGACTACATAGAGCAAGAAGCGGCGAAGAACTTCGAATCAGCGTTCAGAGCTTTCTACCAGATTTT CCCCTACGGCCGATTCGCTCACTTCGCCGCCAATTCGGCGATAATCGAGTCGATCCCGGCGGATGTCCAGACCGTCCACATCTTCGATTTCGACATCGGC GAGGGCGTCCAGTGGCCGCCGGTGATCGAAGCGCTAGCGGGGATGGGGAACAAATCCGTTACGTTAACGGCGGTAACTTGGGAAACGGAAACAGAAACAG AGTCGGATCTGGAGGATGGAGATTGGTGGCCGTCGATGTGGAATTTCGAGGAGGTGAAAGGACGGTTAATGGATTTTTCGGATCGGGTCGGGTTGAAGAT GGAGATCCACGGGGTCCGAATCGGAGATTTGAAGAAGAAAACGAAGAAATTCAAATTAAAGCAATGGTGTGTGTTCAACTGTATGATTTTGCTTCCGCAC ATGAGAAGAGTGAGGGGCAGAGAGGTAATTTCTGAGTTTCTGTCAACTGCGGGCGAGTCGATCAGCGAGTCAGCCGGGATCGTGACTCGGGGAGAAGGAG GAGAGCCATGGGAGGAGGAGAGTGATGTGAAGCTGGGAGAGTTCTTCGAAAGGAACATGGTGTATTACAGGTCACTGTTGGAGTCAATTGAGCTGAGTTT TCCTGAGCTAGCGGAGGCGAGGATGGCGCTGGAGTGTTTGTTCGTGGCGCCGTACATTTCTTCTCGGGAGTGGATAAGGAGGTGGACGGAGATGACAACG GAGGCGGTGGTGGCGGTGGGGGAGAAGTGGAATGTGAGTAAAGAGAGCTTGGAGGAAGCGAAGGAGATGGTGAAGGAGAGGCAGACGGCGTTTGGAGTTA GAATTGGGGGGCATGGGAGGGAGAATGAGATGGTTCTGGAGTGGAATGGTACGCCGTTGGTGAGAGTTCGGTCGATCTGGAGGCAGTGA
AA sequence Show only first row Show all	>Lus10022664 pacid=23178526 polypeptide=Lus10022664 locus=Lus10022664.g ID=Lus10022664.BGIv1.0 annot-version=v1.0 MINPPPSFTDLQPSEDDDMDIIINTSIHHFSDQLSPDCSSDGLAMITLSTEELLMNISDTNNSDASPMETAISTDSLDIPSEETELGNQVSVFHLLKAYG EAMEAGQGELADVIMASVSEKVSPAGDPLERLGFNLSKDLYNKEADYIEQEAAKNFESAFRAFYQIFPYGRFAHFAANSAIIESIPADVQTVHIFDFDIG EGVQWPPVIEALAGMGNKSVTLTAVTWETETETESDLEDGDWWPSMWNFEEVKGRLMDFSDRVGLKMEIHGVRIGDLKKKTKKFKLKQWCVFNCMILLPH MRRVRGREVISEFLSTAGESISESAGIVTRGEGGEPWEEESDVKLGEFFERNMVYYRSLLESIELSFPELAEARMALECLFVAPYISSREWIRRWTEMTT EAVVAVGEKWNVSKESLEEAKEMVKERQTAFGVRIGGHGRENEMVLEWNGTPLVRVRSIWRQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08250	GRAS		GRAS family transcription fact...		Lus10022664 [exp]	0	1
AT2G04740			ankyrin repeat family protein ...		Lus10006408 [exp]	1.7	0.8344
AT1G61550			S-locus lectin protein kinase ...		Lus10037730 [exp]	4.7	0.8239
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10007127 [exp]	7.7	0.7850
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10000154 [exp]	8.7	0.7808
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10018527 [exp]	10.2	0.8098
AT3G57120			Protein kinase superfamily pro...		Lus10011517 [exp]	11.8	0.8105
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003397 [exp]	11.8	0.7048
AT1G70250			receptor serine/threonine kina...		Lus10008361 [exp]	12.0	0.7943
					Lus10032841 [exp]	17.7	0.8109
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10028047 [exp]	17.7	0.7961

Compare expression of checked genes

Lus10022664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.