Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 280 / 5e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 258 / 5e-76 transmembrane receptors;ATP binding (.1.2) AT1G27180 233 / 3e-67 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 218 / 4e-62 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G11170 209 / 2e-59 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 202 / 6e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 199 / 3e-56 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 199 / 7e-56 Disease resistance protein (TIR-NBS-LRR class) (.1) AT2G16870 199 / 9e-56 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 199 / 1e-55 disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014207 [exp] 855 / 0 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004257 [exp] 681 / 0 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001366 [exp] 590 / 0 AT5G36930 424 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042165 [exp] 585 / 0 AT5G36930 326 / 9e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001375 [exp] 582 / 0 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018658 [exp] 544 / 0 AT1G27180 360 / 4e-106 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10035674 [exp] 516 / 2e-170 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 506 / 5e-168 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 501 / 2e-167 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021681 [exp] 316 / 1e-97 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 312 / 2e-97 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 315 / 5e-97 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 310 / 2e-96 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 299 / 2e-95 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.015G043501 [exp] 297 / 3e-95 AT1G27170 534 / 5e-176 transmembrane receptors;ATP binding (.1.2) Potri.T002066 [exp] 308 / 1e-94 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 306 / 6e-94 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 301 / 3e-93 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 304 / 6e-93 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10022707 pacid=23178681 polypeptide=Lus10022707 locus=Lus10022707.g ID=Lus10022707.BGIv1.0 annot-version=v1.0 ATGGTGGATTGCCGGAACCAAGATCGTGGCCATGTCTTCTTCCCTATTTTCTATCTTGTTGATCCCAGGGACGTGAGGCATCAGACCGGGTCTTACCAGG AGGCGTTTCGGCTTCACGAGACGAAGCACGATAAGAAGACTGTGCAGGGTTGGAGAGATGCTCTCAAAGTGGTTGGAGAGATGAAAGGATGGCACATCAG TCACTCCGATTGGCAAGGAAGTATAGTAGACCAGGTTTTCGAAAAGGTGTTGTCACTTTTGAACAAGAATTATACGCTGGTGACGGATGAGTTAGTTGGG ATTGATCACCATGTGGAGAAGGTTGTGAAATTACTCGACGAAGAAGACTCGGATGCTGTGAAAGTTGTAGGGATTCATGGCATGGGTGGCATTGGCAAGA CCACTATCGCCACTGCTGTTTACAACGAGATCAGTACACACTTCGGATGTTGTAGCTTTCTCGAAGATGTACGAGAAACATTGCAACAGCACGAGGGTAT TGTGGCTTTGCAGAACAAGCTGATCTCCAGCATTACCAGAGCCAACTCTTCGGTTAGTAATGCTAGCGAACGGGTCCGGGTGATAAAAGACAGAATTTCA AGGCACAAAGTTCTCATTGTTCTCAACGATGTGGATGACAAGTTCGAATCTGAAAAGATCTTGGGACGATATGAGAACTTCTCTGCGGGCAGTAGGTTTA TCATTACAACTAGGAATAAGAAACTGCTGACTTCGATTCAAGGGTGCGAGTTGTATGAACCTGAAGAAATGAGTGTTAGACATTCCCTTCAACTGTTCAG CAAGCATGCTTTCAGAATGGATTTTCCCCCGAAAGATTACGAAAGCTTATCTAGACAATTTGTTCTAGTTGCTGCAGGACTTCCTTTGACTCTTAAAGTT GTAGGTTCCCTTCTGTTTGGTGACGATAAGTCGATCTGGGAAGACACATTTATGCAGTTAAAAGAAATCCCTCCCACGGAGGTCGTAGGAAGACTTCAAC TAAGTTACAATGCGTTGACGTACCAGGAGCAAAGAATCTTTCTTGATATTGCTTGCTTCTTCATTGGAGAGAACAGAGAAATTGCTTCTTATATGTGGAA GGATTGCAAGTTTTATCCAGTCAGTGGGATCAATGTCCTTATCCTTAGGTCCTTGATCAAAATCGGACCGAAGAATGAGTTCAAGATGCATGATCAGCTT AGAGACCTTGGTCGGGTGATTGTTCGTGAGGAGAATTTCGAGAATCCATGGAAGCGAAGTCGAGTATGGTCGCACGACGATGCTTTGGACATATTAGAAC GCAAGAAGGTATGA
AA sequence Show only first row Show all	>Lus10022707 pacid=23178681 polypeptide=Lus10022707 locus=Lus10022707.g ID=Lus10022707.BGIv1.0 annot-version=v1.0 MVDCRNQDRGHVFFPIFYLVDPRDVRHQTGSYQEAFRLHETKHDKKTVQGWRDALKVVGEMKGWHISHSDWQGSIVDQVFEKVLSLLNKNYTLVTDELVG IDHHVEKVVKLLDEEDSDAVKVVGIHGMGGIGKTTIATAVYNEISTHFGCCSFLEDVRETLQQHEGIVALQNKLISSITRANSSVSNASERVRVIKDRIS RHKVLIVLNDVDDKFESEKILGRYENFSAGSRFIITTRNKKLLTSIQGCELYEPEEMSVRHSLQLFSKHAFRMDFPPKDYESLSRQFVLVAAGLPLTLKV VGSLLFGDDKSIWEDTFMQLKEIPPTEVVGRLQLSYNALTYQEQRIFLDIACFFIGENREIASYMWKDCKFYPVSGINVLILRSLIKIGPKNEFKMHDQL RDLGRVIVREENFENPWKRSRVWSHDDALDILERKKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10022707 [exp]	0	1
AT2G45260			Plant protein of unknown funct...		Lus10024190 [exp]	17.2	0.7501
AT4G37250			Leucine-rich repeat protein ki...		Lus10019315 [exp]	26.4	0.7210
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014044 [exp]	46.1	0.7073
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	56.0	0.6912
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10004454 [exp]	61.5	0.6809
AT3G27470			Protein of unknown function (D...		Lus10003659 [exp]	87.7	0.6085
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	89.6	0.6534
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10026110 [exp]	141.8	0.6319
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10030951 [exp]	162.9	0.6342
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10029613 [exp]	165.1	0.6330

Compare expression of checked genes

Lus10022707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.