Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 384 / 2e-134 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 235 / 5e-76 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 224 / 2e-72 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 224 / 2e-72 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G26760 225 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 217 / 1e-69 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 219 / 2e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 206 / 2e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 206 / 3e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 195 / 2e-60 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029438 [exp] 558 / 0 AT3G51680 396 / 3e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 389 / 2e-136 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 250 / 3e-82 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 250 / 4e-82 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 249 / 7e-82 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 249 / 1e-81 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 247 / 6e-81 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038057 [exp] 246 / 7e-81 AT2G47140 341 / 4e-119 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 246 / 1e-80 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105900 [exp] 414 / 2e-146 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 413 / 7e-146 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 394 / 2e-138 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 268 / 1e-89 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 263 / 3e-87 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 260 / 3e-86 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 256 / 1e-84 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 252 / 6e-83 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 248 / 1e-81 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 244 / 6e-80 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10022756 pacid=23178664 polypeptide=Lus10022756 locus=Lus10022756.g ID=Lus10022756.BGIv1.0 annot-version=v1.0 ATGACTGCACAAGTTATTCCGGCGGAGACAACCCTTCAACAGCCGGGCATTCATGTCTTGTCCGGCAGAGACCAACAATCCCATCTCCCTCCCCGAAGAT TGGAAGGAAAGATTGCGGTAGTGACAGGTGGCGCACGGGGAATTGGGGAAGCAACTGCGCGTCTTTTCGCAAAGCTCGGAGCCAAAGTTGTGATTGCCGA CGTGGATGACAAACTCGGAAACGCATTGGCCGACTCTTTATCATTGTCCTCGATGACAATGACTCCCTCTCCTCCTTGTGTATCGTATGTGCACTGCGAT GTCAGCTCCGAACCGGACGTCGAAAACCTTATAAACTCCACGGTTTCAAGATACGGGAGGTTAGATATACTCTTCAACAACGCCGGTATTCTGGGGTCGC AGACGAAAAAAAAGAAGAGCATCATCAACTTCGACGCGAGTGAATTTGACCGCGTCATGCGGGTCAACGTGCTGGGAATGGCGCTGGGGATCAAGCATGC GGCCCGCGCGATGATCCCACGTGGCGGTGGGTGCATAGTGTCCACCGCCAGCGTGGCGGGGGTAATGGGAGGGATGGGGCCCCACGCTTACACCGCGTCC AAGCACGCCATAGTGGGGCTAACAAAAAACGCGGCGTGCGAGTTGGGAAAGTACGGGATCCGTGTTAACTGCATTTCCCCGTTCGGGGTCGCCACGTCAA TGTTGGTCAACGCATGGCGCGACGACGAGAATGCAAATGACGACGAGGATGAGATCATGTTGCCCTGTGAGGAGGAGGTGGAGGAAATTGAGGAGTTTGT GAGGGGGTTGGGGAATTTGAAAGGAGGAGCGACGCTGAAGGCAAGAGATATAGCAGAGGCAGCGGTGTATTTGGTTAGCGACGAGTCTAAGTACGTTAGC GGGCATAACCTTGTGGTGGATGGCGGTGTAACGACTTCGAGAAATTGTGTTGGATTGTAA
AA sequence Show only first row Show all	>Lus10022756 pacid=23178664 polypeptide=Lus10022756 locus=Lus10022756.g ID=Lus10022756.BGIv1.0 annot-version=v1.0 MTAQVIPAETTLQQPGIHVLSGRDQQSHLPPRRLEGKIAVVTGGARGIGEATARLFAKLGAKVVIADVDDKLGNALADSLSLSSMTMTPSPPCVSYVHCD VSSEPDVENLINSTVSRYGRLDILFNNAGILGSQTKKKKSIINFDASEFDRVMRVNVLGMALGIKHAARAMIPRGGGCIVSTASVAGVMGGMGPHAYTAS KHAIVGLTKNAACELGKYGIRVNCISPFGVATSMLVNAWRDDENANDDEDEIMLPCEEEVEEIEEFVRGLGNLKGGATLKARDIAEAAVYLVSDESKYVS GHNLVVDGGVTTSRNCVGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10022756 [exp]	0	1
AT3G07310			Protein of unknown function (D...		Lus10002342 [exp]	2.2	0.9873
					Lus10004280 [exp]	3.2	0.9833
AT2G41480			Peroxidase superfamily protein...		Lus10007051 [exp]	3.5	0.9727
AT4G14480			Protein kinase superfamily pro...		Lus10041162 [exp]	3.5	0.9821
AT2G19130			S-locus lectin protein kinase ...		Lus10026390 [exp]	4.2	0.9704
AT2G23770			protein kinase family protein ...		Lus10018788 [exp]	4.5	0.9792
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10032950 [exp]	4.7	0.9730
					Lus10009731 [exp]	5.5	0.9715
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017981 [exp]	8.2	0.9816
					Lus10019232 [exp]	9.4	0.9765

Compare expression of checked genes

Lus10022756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.